Gene : Seita.1G266400 S. italica v2.2
Defline:  (1 of 6) PF00924 - Mechanosensitive ion channel (MS_channel) Genomic Order:  2664
Name:  ? Seita.1G266400 Secondary Identifier:  ? PAC:32695906
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G266400 0.5kb upstream 0.5kb upstream 4780 true scaffold_1: 33944095-33948874 Setaria italica
Seita.1G266400 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 33944095-33944594 Setaria italica
Seita.1G266400 0.5kb downstream 0.5kb downstream 4780 true scaffold_1: 33944595-33949374 Setaria italica
Seita.1G266400 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 33948875-33949374 Setaria italica
Seita.1G266400 1.0kb upstream 1.0kb upstream 5280 true scaffold_1: 33943595-33948874 Setaria italica
Seita.1G266400 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 33943595-33944594 Setaria italica
Seita.1G266400 1.0kb downstream 1.0kb downstream 5280 true scaffold_1: 33944595-33949874 Setaria italica
Seita.1G266400 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 33948875-33949874 Setaria italica
Seita.1G266400 2.0kb upstream 2.0kb upstream 6280 true scaffold_1: 33942595-33948874 Setaria italica
Seita.1G266400 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 33942595-33944594 Setaria italica
Seita.1G266400 2.0kb downstream 2.0kb downstream 6280 true scaffold_1: 33944595-33950874 Setaria italica
Seita.1G266400 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 33948875-33950874 Setaria italica
Seita.1G266400 5.0kb upstream 5.0kb upstream 9280 true scaffold_1: 33939595-33948874 Setaria italica
Seita.1G266400 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 33939595-33944594 Setaria italica
Seita.1G266400 5.0kb downstream 5.0kb downstream 9280 true scaffold_1: 33944595-33953874 Setaria italica
Seita.1G266400 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 33948875-33953874 Setaria italica
Seita.1G266400 10.0kb upstream 10.0kb upstream 14280 true scaffold_1: 33934595-33948874 Setaria italica
Seita.1G266400 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 33934595-33944594 Setaria italica
Seita.1G266400 10.0kb downstream 10.0kb downstream 14280 true scaffold_1: 33944595-33958874 Setaria italica
Seita.1G266400 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 33948875-33958874 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187663 5267 Panicoideae View MSA
124578867 5269 Grass View MSA
122045304 5273 Angiosperm View MSA
121348130 5274 Embryophyte View MSA
123428857 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.823     High High
cufflinks 5.455        
cufflinks 0.939       Low
cufflinks 0.812       Low
cufflinks 4.711        
cufflinks 6.195        
cufflinks 7.796        
cufflinks 4.336        
cufflinks 23.684     High High
cufflinks 6.504        
cufflinks 8.866        
cufflinks 1.571        
cufflinks 2.511        
cufflinks 1.918        
cufflinks 1.878        
cufflinks 8.119        
cufflinks 0.828       Low
cufflinks 14.436     High High
cufflinks 2.167        
cufflinks 1.902        

0 Strain