Gene : Seita.1G272900 S. italica v2.2
Defline:  (1 of 2) PTHR30566:SF5 - MECHANOSENSITIVE ION CHANNEL PROTEIN 1, MITOCHONDRIAL Genomic Order:  2729
Name:  ? Seita.1G272900 Secondary Identifier:  ? PAC:32695066
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G272900 0.5kb upstream 0.5kb upstream 6068 true scaffold_1: 34563164-34569231 Setaria italica
Seita.1G272900 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 34563164-34563663 Setaria italica
Seita.1G272900 0.5kb downstream 0.5kb downstream 6068 true scaffold_1: 34563664-34569731 Setaria italica
Seita.1G272900 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 34569232-34569731 Setaria italica
Seita.1G272900 1.0kb upstream 1.0kb upstream 6568 true scaffold_1: 34562664-34569231 Setaria italica
Seita.1G272900 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 34562664-34563663 Setaria italica
Seita.1G272900 1.0kb downstream 1.0kb downstream 6568 true scaffold_1: 34563664-34570231 Setaria italica
Seita.1G272900 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 34569232-34570231 Setaria italica
Seita.1G272900 2.0kb upstream 2.0kb upstream 7568 true scaffold_1: 34561664-34569231 Setaria italica
Seita.1G272900 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 34561664-34563663 Setaria italica
Seita.1G272900 2.0kb downstream 2.0kb downstream 7568 true scaffold_1: 34563664-34571231 Setaria italica
Seita.1G272900 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 34569232-34571231 Setaria italica
Seita.1G272900 5.0kb upstream 5.0kb upstream 10568 true scaffold_1: 34558664-34569231 Setaria italica
Seita.1G272900 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 34558664-34563663 Setaria italica
Seita.1G272900 5.0kb downstream 5.0kb downstream 10568 true scaffold_1: 34563664-34574231 Setaria italica
Seita.1G272900 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 34569232-34574231 Setaria italica
Seita.1G272900 10.0kb upstream 10.0kb upstream 15568 true scaffold_1: 34553664-34569231 Setaria italica
Seita.1G272900 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 34553664-34563663 Setaria italica
Seita.1G272900 10.0kb downstream 10.0kb downstream 15568 true scaffold_1: 34563664-34579231 Setaria italica
Seita.1G272900 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 34569232-34579231 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121994542 5273 Angiosperm View MSA
122175605 5267 Panicoideae View MSA
124584626 5269 Grass View MSA
121351031 5274 Embryophyte View MSA
123427972 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.071     Low  
cufflinks 0.098     Low  
cufflinks 0.015     Low Low
cufflinks 0.002     Low Low
cufflinks 0.015     Low Low
cufflinks 0.081     Low  
cufflinks 0.021     Low  
cufflinks 0.043     Low  
cufflinks 0.035     Low  
cufflinks 0.102     Low  
cufflinks 0.083     Low  
cufflinks 0.118     Low  
cufflinks 0.523       High
cufflinks 0.053     Low  
cufflinks 0.294       High
cufflinks 0.026     Low  
cufflinks 0.157        
cufflinks 0.031     Low  
cufflinks 0.083     Low  
cufflinks 0.158        

0 Strain