Gene : Seita.1G273600 S. italica v2.2
Defline:  (1 of 1) PTHR19919:SF2 - PROTEIN TRANSPARENT TESTA GLABRA 1 Genomic Order:  2736
Name:  ? Seita.1G273600 Secondary Identifier:  ? PAC:32696783
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G273600 0.5kb upstream 0.5kb upstream 3881 true scaffold_1: 34662037-34665917 Setaria italica
Seita.1G273600 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 34665418-34665917 Setaria italica
Seita.1G273600 0.5kb downstream 0.5kb downstream 3881 true scaffold_1: 34661537-34665417 Setaria italica
Seita.1G273600 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 34661537-34662036 Setaria italica
Seita.1G273600 1.0kb upstream 1.0kb upstream 4381 true scaffold_1: 34662037-34666417 Setaria italica
Seita.1G273600 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 34665418-34666417 Setaria italica
Seita.1G273600 1.0kb downstream 1.0kb downstream 4381 true scaffold_1: 34661037-34665417 Setaria italica
Seita.1G273600 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 34661037-34662036 Setaria italica
Seita.1G273600 2.0kb upstream 2.0kb upstream 5381 true scaffold_1: 34662037-34667417 Setaria italica
Seita.1G273600 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 34665418-34667417 Setaria italica
Seita.1G273600 2.0kb downstream 2.0kb downstream 5381 true scaffold_1: 34660037-34665417 Setaria italica
Seita.1G273600 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 34660037-34662036 Setaria italica
Seita.1G273600 5.0kb upstream 5.0kb upstream 8381 true scaffold_1: 34662037-34670417 Setaria italica
Seita.1G273600 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 34665418-34670417 Setaria italica
Seita.1G273600 5.0kb downstream 5.0kb downstream 8381 true scaffold_1: 34657037-34665417 Setaria italica
Seita.1G273600 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 34657037-34662036 Setaria italica
Seita.1G273600 10.0kb upstream 10.0kb upstream 13381 true scaffold_1: 34662037-34675417 Setaria italica
Seita.1G273600 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 34665418-34675417 Setaria italica
Seita.1G273600 10.0kb downstream 10.0kb downstream 13381 true scaffold_1: 34652037-34665417 Setaria italica
Seita.1G273600 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 34652037-34662036 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183114 5267 Panicoideae View MSA
124575101 5269 Grass View MSA
122050418 5273 Angiosperm View MSA
121348109 5274 Embryophyte View MSA
123423806 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.281        
cufflinks 2.52        
cufflinks 1.579       Low
cufflinks 1.816       Low
cufflinks 3.929        
cufflinks 2.651        
cufflinks 6.215       High
cufflinks 2.283        
cufflinks 4.347        
cufflinks 6.831       High
cufflinks 2.704        
cufflinks 2.806        
cufflinks 2.136        
cufflinks 6.455       High
cufflinks 3.573        
cufflinks 2.399        
cufflinks 3.43        
cufflinks 2.077       Low
cufflinks 4.099        
cufflinks 3.309        

0 Strain