Gene : Seita.1G272600 S. italica v2.2
Defline:  (1 of 1) 4.6.1.12 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / MECDP-synthase Genomic Order:  2726
Name:  ? Seita.1G272600 Secondary Identifier:  ? PAC:32694146
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-7560 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G272600 0.5kb upstream 0.5kb upstream 2528 true scaffold_1: 34549223-34551750 Setaria italica
Seita.1G272600 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 34551251-34551750 Setaria italica
Seita.1G272600 0.5kb downstream 0.5kb downstream 2528 true scaffold_1: 34548723-34551250 Setaria italica
Seita.1G272600 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 34548723-34549222 Setaria italica
Seita.1G272600 1.0kb upstream 1.0kb upstream 3028 true scaffold_1: 34549223-34552250 Setaria italica
Seita.1G272600 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 34551251-34552250 Setaria italica
Seita.1G272600 1.0kb downstream 1.0kb downstream 3028 true scaffold_1: 34548223-34551250 Setaria italica
Seita.1G272600 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 34548223-34549222 Setaria italica
Seita.1G272600 2.0kb upstream 2.0kb upstream 4028 true scaffold_1: 34549223-34553250 Setaria italica
Seita.1G272600 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 34551251-34553250 Setaria italica
Seita.1G272600 2.0kb downstream 2.0kb downstream 4028 true scaffold_1: 34547223-34551250 Setaria italica
Seita.1G272600 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 34547223-34549222 Setaria italica
Seita.1G272600 5.0kb upstream 5.0kb upstream 7028 true scaffold_1: 34549223-34556250 Setaria italica
Seita.1G272600 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 34551251-34556250 Setaria italica
Seita.1G272600 5.0kb downstream 5.0kb downstream 7028 true scaffold_1: 34544223-34551250 Setaria italica
Seita.1G272600 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 34544223-34549222 Setaria italica
Seita.1G272600 10.0kb upstream 10.0kb upstream 12028 true scaffold_1: 34549223-34561250 Setaria italica
Seita.1G272600 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 34551251-34561250 Setaria italica
Seita.1G272600 10.0kb downstream 10.0kb downstream 12028 true scaffold_1: 34539223-34551250 Setaria italica
Seita.1G272600 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 34539223-34549222 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122192729 5267 Panicoideae View MSA
124578678 5269 Grass View MSA
122042234 5273 Angiosperm View MSA
121344039 5274 Embryophyte View MSA
123423768 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.027        
cufflinks 10.328        
cufflinks 15.644     High  
cufflinks 12.975     High  
cufflinks 15.863     High  
cufflinks 12.485        
cufflinks 20.68     High  
cufflinks 39.981     High High
cufflinks 24.65     High High
cufflinks 12.098        
cufflinks 6.544       Low
cufflinks 9.886        
cufflinks 6.528       Low
cufflinks 22.194     High High
cufflinks 8.343        
cufflinks 17.74     High  
cufflinks 11.515        
cufflinks 6.248       Low
cufflinks 24.663     High High
cufflinks 12.751        

0 Strain