Gene : Seita.1G278400 S. italica v2.2
Defline:  (1 of 1) PTHR10799:SF603 - PROTEIN PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 Genomic Order:  2784
Name:  ? Seita.1G278400 Secondary Identifier:  ? PAC:32696593
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G278400 0.5kb upstream 0.5kb upstream 13042 true scaffold_1: 34986951-34999992 Setaria italica
Seita.1G278400 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 34999493-34999992 Setaria italica
Seita.1G278400 0.5kb downstream 0.5kb downstream 13042 true scaffold_1: 34986451-34999492 Setaria italica
Seita.1G278400 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 34986451-34986950 Setaria italica
Seita.1G278400 1.0kb upstream 1.0kb upstream 13542 true scaffold_1: 34986951-35000492 Setaria italica
Seita.1G278400 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 34999493-35000492 Setaria italica
Seita.1G278400 1.0kb downstream 1.0kb downstream 13542 true scaffold_1: 34985951-34999492 Setaria italica
Seita.1G278400 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 34985951-34986950 Setaria italica
Seita.1G278400 2.0kb upstream 2.0kb upstream 14542 true scaffold_1: 34986951-35001492 Setaria italica
Seita.1G278400 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 34999493-35001492 Setaria italica
Seita.1G278400 2.0kb downstream 2.0kb downstream 14542 true scaffold_1: 34984951-34999492 Setaria italica
Seita.1G278400 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 34984951-34986950 Setaria italica
Seita.1G278400 5.0kb upstream 5.0kb upstream 17542 true scaffold_1: 34986951-35004492 Setaria italica
Seita.1G278400 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 34999493-35004492 Setaria italica
Seita.1G278400 5.0kb downstream 5.0kb downstream 17542 true scaffold_1: 34981951-34999492 Setaria italica
Seita.1G278400 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 34981951-34986950 Setaria italica
Seita.1G278400 10.0kb upstream 10.0kb upstream 22542 true scaffold_1: 34986951-35009492 Setaria italica
Seita.1G278400 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 34999493-35009492 Setaria italica
Seita.1G278400 10.0kb downstream 10.0kb downstream 22542 true scaffold_1: 34976951-34999492 Setaria italica
Seita.1G278400 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 34976951-34986950 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122196705 5267 Panicoideae View MSA
124582188 5269 Grass View MSA
122045682 5273 Angiosperm View MSA
121347848 5274 Embryophyte View MSA
123428510 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.395        
cufflinks 12.931       High
cufflinks 11.155     High  
cufflinks 8.347        
cufflinks 8.065        
cufflinks 12.98       High
cufflinks 11.388        
cufflinks 5.967       Low
cufflinks 8.272        
cufflinks 4.501       Low
cufflinks 9.516        
cufflinks 8.243        
cufflinks 7.973        
cufflinks 9.653        
cufflinks 10.339        
cufflinks 12.7     High High
cufflinks 6.085       Low
cufflinks 14.872     High High
cufflinks 6.946        
cufflinks 8.078        

0 Strain