Gene : Seita.1G278600 S. italica v2.2
Genomic Order:  2786 Name:  ? Seita.1G278600
Secondary Identifier:  ? PAC:32694598
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G278600 0.5kb upstream 0.5kb upstream 3191 true scaffold_1: 35017557-35020747 Setaria italica
Seita.1G278600 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 35017557-35018056 Setaria italica
Seita.1G278600 0.5kb downstream 0.5kb downstream 3191 true scaffold_1: 35018057-35021247 Setaria italica
Seita.1G278600 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 35020748-35021247 Setaria italica
Seita.1G278600 1.0kb upstream 1.0kb upstream 3691 true scaffold_1: 35017057-35020747 Setaria italica
Seita.1G278600 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 35017057-35018056 Setaria italica
Seita.1G278600 1.0kb downstream 1.0kb downstream 3691 true scaffold_1: 35018057-35021747 Setaria italica
Seita.1G278600 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 35020748-35021747 Setaria italica
Seita.1G278600 2.0kb upstream 2.0kb upstream 4691 true scaffold_1: 35016057-35020747 Setaria italica
Seita.1G278600 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 35016057-35018056 Setaria italica
Seita.1G278600 2.0kb downstream 2.0kb downstream 4691 true scaffold_1: 35018057-35022747 Setaria italica
Seita.1G278600 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 35020748-35022747 Setaria italica
Seita.1G278600 5.0kb upstream 5.0kb upstream 7691 true scaffold_1: 35013057-35020747 Setaria italica
Seita.1G278600 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 35013057-35018056 Setaria italica
Seita.1G278600 5.0kb downstream 5.0kb downstream 7691 true scaffold_1: 35018057-35025747 Setaria italica
Seita.1G278600 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 35020748-35025747 Setaria italica
Seita.1G278600 10.0kb upstream 10.0kb upstream 12691 true scaffold_1: 35008057-35020747 Setaria italica
Seita.1G278600 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 35008057-35018056 Setaria italica
Seita.1G278600 10.0kb downstream 10.0kb downstream 12691 true scaffold_1: 35018057-35030747 Setaria italica
Seita.1G278600 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 35020748-35030747 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028162 5273 Angiosperm View MSA
122180491 5267 Panicoideae View MSA
124589577 5269 Grass View MSA
121297693 5274 Embryophyte View MSA
123335723 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.407        
cufflinks 5.822        
cufflinks 9.618        
cufflinks 12.638     High  
cufflinks 8.549        
cufflinks 5.544        
cufflinks 5.092       Low
cufflinks 5.671        
cufflinks 4.079       Low
cufflinks 15.681     High  
cufflinks 9.271        
cufflinks 18.749     High High
cufflinks 18.161     High High
cufflinks 14.23     High  
cufflinks 16.117     High High
cufflinks 2.94       Low
cufflinks 17.066     High High
cufflinks 8.237        
cufflinks 9.944        
cufflinks 14.052        

0 Strain