Gene : Seita.1G282300 S. italica v2.2
Defline:  (1 of 3) PTHR22601:SF11 - OLIGOPEPTIDE TRANSPORTER 4 Genomic Order:  2823
Name:  ? Seita.1G282300 Secondary Identifier:  ? PAC:32694965
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G282300 0.5kb upstream 0.5kb upstream 7540 true scaffold_1: 35282803-35290342 Setaria italica
Seita.1G282300 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 35289843-35290342 Setaria italica
Seita.1G282300 0.5kb downstream 0.5kb downstream 7540 true scaffold_1: 35282303-35289842 Setaria italica
Seita.1G282300 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 35282303-35282802 Setaria italica
Seita.1G282300 1.0kb upstream 1.0kb upstream 8040 true scaffold_1: 35282803-35290842 Setaria italica
Seita.1G282300 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 35289843-35290842 Setaria italica
Seita.1G282300 1.0kb downstream 1.0kb downstream 8040 true scaffold_1: 35281803-35289842 Setaria italica
Seita.1G282300 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 35281803-35282802 Setaria italica
Seita.1G282300 2.0kb upstream 2.0kb upstream 9040 true scaffold_1: 35282803-35291842 Setaria italica
Seita.1G282300 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 35289843-35291842 Setaria italica
Seita.1G282300 2.0kb downstream 2.0kb downstream 9040 true scaffold_1: 35280803-35289842 Setaria italica
Seita.1G282300 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 35280803-35282802 Setaria italica
Seita.1G282300 5.0kb upstream 5.0kb upstream 12040 true scaffold_1: 35282803-35294842 Setaria italica
Seita.1G282300 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 35289843-35294842 Setaria italica
Seita.1G282300 5.0kb downstream 5.0kb downstream 12040 true scaffold_1: 35277803-35289842 Setaria italica
Seita.1G282300 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 35277803-35282802 Setaria italica
Seita.1G282300 10.0kb upstream 10.0kb upstream 17040 true scaffold_1: 35282803-35299842 Setaria italica
Seita.1G282300 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 35289843-35299842 Setaria italica
Seita.1G282300 10.0kb downstream 10.0kb downstream 17040 true scaffold_1: 35272803-35289842 Setaria italica
Seita.1G282300 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 35272803-35282802 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122192447 5267 Panicoideae View MSA
124580765 5269 Grass View MSA
122046931 5273 Angiosperm View MSA
121351141 5274 Embryophyte View MSA
123382023 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.742        
cufflinks 7.319        
cufflinks 17.982     High High
cufflinks 12.907     High  
cufflinks 10.389        
cufflinks 8.168        
cufflinks 5.739        
cufflinks 5.603        
cufflinks 5.764        
cufflinks 4.158        
cufflinks 6.787        
cufflinks 1.932       Low
cufflinks 4.644        
cufflinks 24.0     High High
cufflinks 12.313        
cufflinks 1.232       Low
cufflinks 4.673        
cufflinks 0.681       Low
cufflinks 13.463     High  
cufflinks 4.608        

0 Strain