Gene : Seita.1G284500 S. italica v2.2
Defline:  (1 of 1) PTHR21262//PTHR21262:SF7 - GUANOSINE-3',5'-BIS DIPHOSPHATE 3'-PYROPHOSPHOHYDROLASE Genomic Order:  2845
Name:  ? Seita.1G284500 Secondary Identifier:  ? PAC:32697063
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G284500 0.5kb upstream 0.5kb upstream 8773 true scaffold_1: 35467386-35476158 Setaria italica
Seita.1G284500 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 35467386-35467885 Setaria italica
Seita.1G284500 0.5kb downstream 0.5kb downstream 8773 true scaffold_1: 35467886-35476658 Setaria italica
Seita.1G284500 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 35476159-35476658 Setaria italica
Seita.1G284500 1.0kb upstream 1.0kb upstream 9273 true scaffold_1: 35466886-35476158 Setaria italica
Seita.1G284500 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 35466886-35467885 Setaria italica
Seita.1G284500 1.0kb downstream 1.0kb downstream 9273 true scaffold_1: 35467886-35477158 Setaria italica
Seita.1G284500 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 35476159-35477158 Setaria italica
Seita.1G284500 2.0kb upstream 2.0kb upstream 10273 true scaffold_1: 35465886-35476158 Setaria italica
Seita.1G284500 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 35465886-35467885 Setaria italica
Seita.1G284500 2.0kb downstream 2.0kb downstream 10273 true scaffold_1: 35467886-35478158 Setaria italica
Seita.1G284500 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 35476159-35478158 Setaria italica
Seita.1G284500 5.0kb upstream 5.0kb upstream 13273 true scaffold_1: 35462886-35476158 Setaria italica
Seita.1G284500 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 35462886-35467885 Setaria italica
Seita.1G284500 5.0kb downstream 5.0kb downstream 13273 true scaffold_1: 35467886-35481158 Setaria italica
Seita.1G284500 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 35476159-35481158 Setaria italica
Seita.1G284500 10.0kb upstream 10.0kb upstream 18273 true scaffold_1: 35457886-35476158 Setaria italica
Seita.1G284500 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 35457886-35467885 Setaria italica
Seita.1G284500 10.0kb downstream 10.0kb downstream 18273 true scaffold_1: 35467886-35486158 Setaria italica
Seita.1G284500 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 35476159-35486158 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182522 5267 Panicoideae View MSA
124575485 5269 Grass View MSA
122048422 5273 Angiosperm View MSA
121348424 5274 Embryophyte View MSA
123425764 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.92        
cufflinks 6.528        
cufflinks 47.006     High High
cufflinks 38.269     High High
cufflinks 28.483     High High
cufflinks 5.955        
cufflinks 18.404     High  
cufflinks 19.061     High  
cufflinks 14.019     High  
cufflinks 3.159       Low
cufflinks 6.616        
cufflinks 3.114       Low
cufflinks 4.654        
cufflinks 28.462     High High
cufflinks 5.008        
cufflinks 27.166     High High
cufflinks 3.136       Low
cufflinks 6.64        
cufflinks 31.967     High High
cufflinks 3.755       Low

0 Strain