Gene : Seita.1G284600 S. italica v2.2
Genomic Order:  2846 Name:  ? Seita.1G284600
Secondary Identifier:  ? PAC:32697760
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G284600 0.5kb upstream 0.5kb upstream 4358 true scaffold_1: 35476611-35480968 Setaria italica
Seita.1G284600 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 35476611-35477110 Setaria italica
Seita.1G284600 0.5kb downstream 0.5kb downstream 4358 true scaffold_1: 35477111-35481468 Setaria italica
Seita.1G284600 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 35480969-35481468 Setaria italica
Seita.1G284600 1.0kb upstream 1.0kb upstream 4858 true scaffold_1: 35476111-35480968 Setaria italica
Seita.1G284600 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 35476111-35477110 Setaria italica
Seita.1G284600 1.0kb downstream 1.0kb downstream 4858 true scaffold_1: 35477111-35481968 Setaria italica
Seita.1G284600 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 35480969-35481968 Setaria italica
Seita.1G284600 2.0kb upstream 2.0kb upstream 5858 true scaffold_1: 35475111-35480968 Setaria italica
Seita.1G284600 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 35475111-35477110 Setaria italica
Seita.1G284600 2.0kb downstream 2.0kb downstream 5858 true scaffold_1: 35477111-35482968 Setaria italica
Seita.1G284600 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 35480969-35482968 Setaria italica
Seita.1G284600 5.0kb upstream 5.0kb upstream 8858 true scaffold_1: 35472111-35480968 Setaria italica
Seita.1G284600 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 35472111-35477110 Setaria italica
Seita.1G284600 5.0kb downstream 5.0kb downstream 8858 true scaffold_1: 35477111-35485968 Setaria italica
Seita.1G284600 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 35480969-35485968 Setaria italica
Seita.1G284600 10.0kb upstream 10.0kb upstream 13858 true scaffold_1: 35467111-35480968 Setaria italica
Seita.1G284600 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 35467111-35477110 Setaria italica
Seita.1G284600 10.0kb downstream 10.0kb downstream 13858 true scaffold_1: 35477111-35490968 Setaria italica
Seita.1G284600 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 35480969-35490968 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188457 5267 Panicoideae View MSA
124569675 5269 Grass View MSA
122049048 5273 Angiosperm View MSA
121351117 5274 Embryophyte View MSA
123382012 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.253        
cufflinks 4.943        
cufflinks 0.179       Low
cufflinks 0.149       Low
cufflinks 0.095       Low
cufflinks 4.174        
cufflinks 3.948        
cufflinks 8.935        
cufflinks 4.31        
cufflinks 6.698        
cufflinks 10.168        
cufflinks 13.8     High  
cufflinks 4.51        
cufflinks 0.1     Low Low
cufflinks 17.132     High High
cufflinks 0.165       Low
cufflinks 18.238     High High
cufflinks 0.215       Low
cufflinks 0.054     Low Low
cufflinks 22.89     High High

0 Strain