Gene : Seita.1G358700 S. italica v2.2
Defline:  (1 of 1) PTHR12276:SF45 - CLATHRIN INTERACTOR 1 Genomic Order:  3587
Name:  ? Seita.1G358700 Secondary Identifier:  ? PAC:32696770
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G358700 0.5kb upstream 0.5kb upstream 6165 true scaffold_1: 40897300-40903464 Setaria italica
Seita.1G358700 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 40902965-40903464 Setaria italica
Seita.1G358700 0.5kb downstream 0.5kb downstream 6165 true scaffold_1: 40896800-40902964 Setaria italica
Seita.1G358700 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 40896800-40897299 Setaria italica
Seita.1G358700 1.0kb upstream 1.0kb upstream 6665 true scaffold_1: 40897300-40903964 Setaria italica
Seita.1G358700 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 40902965-40903964 Setaria italica
Seita.1G358700 1.0kb downstream 1.0kb downstream 6665 true scaffold_1: 40896300-40902964 Setaria italica
Seita.1G358700 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 40896300-40897299 Setaria italica
Seita.1G358700 2.0kb upstream 2.0kb upstream 7665 true scaffold_1: 40897300-40904964 Setaria italica
Seita.1G358700 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 40902965-40904964 Setaria italica
Seita.1G358700 2.0kb downstream 2.0kb downstream 7665 true scaffold_1: 40895300-40902964 Setaria italica
Seita.1G358700 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 40895300-40897299 Setaria italica
Seita.1G358700 5.0kb upstream 5.0kb upstream 10665 true scaffold_1: 40897300-40907964 Setaria italica
Seita.1G358700 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 40902965-40907964 Setaria italica
Seita.1G358700 5.0kb downstream 5.0kb downstream 10665 true scaffold_1: 40892300-40902964 Setaria italica
Seita.1G358700 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 40892300-40897299 Setaria italica
Seita.1G358700 10.0kb upstream 10.0kb upstream 15665 true scaffold_1: 40897300-40912964 Setaria italica
Seita.1G358700 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 40902965-40912964 Setaria italica
Seita.1G358700 10.0kb downstream 10.0kb downstream 15665 true scaffold_1: 40887300-40902964 Setaria italica
Seita.1G358700 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 40887300-40897299 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122197014 5267 Panicoideae View MSA
124572143 5269 Grass View MSA
122043253 5273 Angiosperm View MSA
121347121 5274 Embryophyte View MSA
123428144 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 42.049     High  
cufflinks 58.025     High High
cufflinks 16.611     High Low
cufflinks 13.191     High Low
cufflinks 15.362     High Low
cufflinks 58.72     High High
cufflinks 34.822     High  
cufflinks 20.17     High  
cufflinks 26.193     High  
cufflinks 30.282     High  
cufflinks 56.122     High High
cufflinks 39.818     High  
cufflinks 38.368     High  
cufflinks 28.721     High  
cufflinks 54.723     High High
cufflinks 23.253     High  
cufflinks 36.457     High  
cufflinks 31.59     High  
cufflinks 22.615     High  
cufflinks 48.68     High  

0 Strain