Gene : Seita.1G358500 S. italica v2.2
Defline:  (1 of 1) PTHR33604:SF2 - GLYCOSYLTRANSFERASE FAMILY PROTEIN 2 Genomic Order:  3585
Name:  ? Seita.1G358500 Secondary Identifier:  ? PAC:32694901
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G358500 0.5kb upstream 0.5kb upstream 4537 true scaffold_1: 40880486-40885022 Setaria italica
Seita.1G358500 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 40884523-40885022 Setaria italica
Seita.1G358500 0.5kb downstream 0.5kb downstream 4537 true scaffold_1: 40879986-40884522 Setaria italica
Seita.1G358500 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 40879986-40880485 Setaria italica
Seita.1G358500 1.0kb upstream 1.0kb upstream 5037 true scaffold_1: 40880486-40885522 Setaria italica
Seita.1G358500 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 40884523-40885522 Setaria italica
Seita.1G358500 1.0kb downstream 1.0kb downstream 5037 true scaffold_1: 40879486-40884522 Setaria italica
Seita.1G358500 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 40879486-40880485 Setaria italica
Seita.1G358500 2.0kb upstream 2.0kb upstream 6037 true scaffold_1: 40880486-40886522 Setaria italica
Seita.1G358500 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 40884523-40886522 Setaria italica
Seita.1G358500 2.0kb downstream 2.0kb downstream 6037 true scaffold_1: 40878486-40884522 Setaria italica
Seita.1G358500 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 40878486-40880485 Setaria italica
Seita.1G358500 5.0kb upstream 5.0kb upstream 9037 true scaffold_1: 40880486-40889522 Setaria italica
Seita.1G358500 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 40884523-40889522 Setaria italica
Seita.1G358500 5.0kb downstream 5.0kb downstream 9037 true scaffold_1: 40875486-40884522 Setaria italica
Seita.1G358500 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 40875486-40880485 Setaria italica
Seita.1G358500 10.0kb upstream 10.0kb upstream 14037 true scaffold_1: 40880486-40894522 Setaria italica
Seita.1G358500 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 40884523-40894522 Setaria italica
Seita.1G358500 10.0kb downstream 10.0kb downstream 14037 true scaffold_1: 40870486-40884522 Setaria italica
Seita.1G358500 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 40870486-40880485 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185285 5267 Panicoideae View MSA
124571358 5269 Grass View MSA
122041734 5273 Angiosperm View MSA
121351549 5274 Embryophyte View MSA
123382221 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.025     Low  
cufflinks 0.016     Low  
cufflinks 0.004     Low Low
cufflinks 0.006     Low Low
cufflinks 0.042     Low  
cufflinks 0.013     Low  
cufflinks 0.061     Low  
cufflinks 0.317        
cufflinks 0.03     Low  
cufflinks 1.141       High
cufflinks 0.021     Low  
cufflinks 1.104       High
cufflinks 0.489        
cufflinks 0.028     Low  
cufflinks 2.953       High
cufflinks 0.005     Low Low
cufflinks 1.964       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 3.321       High

0 Strain