Gene : Seita.1G359700 S. italica v2.2
Defline:  (1 of 1) PTHR22957//PTHR22957:SF206 - TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN Genomic Order:  3597
Name:  ? Seita.1G359700 Secondary Identifier:  ? PAC:32698434
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G359700 0.5kb upstream 0.5kb upstream 5263 true scaffold_1: 41002812-41008074 Setaria italica
Seita.1G359700 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 41007575-41008074 Setaria italica
Seita.1G359700 0.5kb downstream 0.5kb downstream 5263 true scaffold_1: 41002312-41007574 Setaria italica
Seita.1G359700 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 41002312-41002811 Setaria italica
Seita.1G359700 1.0kb upstream 1.0kb upstream 5763 true scaffold_1: 41002812-41008574 Setaria italica
Seita.1G359700 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 41007575-41008574 Setaria italica
Seita.1G359700 1.0kb downstream 1.0kb downstream 5763 true scaffold_1: 41001812-41007574 Setaria italica
Seita.1G359700 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 41001812-41002811 Setaria italica
Seita.1G359700 2.0kb upstream 2.0kb upstream 6763 true scaffold_1: 41002812-41009574 Setaria italica
Seita.1G359700 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 41007575-41009574 Setaria italica
Seita.1G359700 2.0kb downstream 2.0kb downstream 6763 true scaffold_1: 41000812-41007574 Setaria italica
Seita.1G359700 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 41000812-41002811 Setaria italica
Seita.1G359700 5.0kb upstream 5.0kb upstream 9763 true scaffold_1: 41002812-41012574 Setaria italica
Seita.1G359700 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 41007575-41012574 Setaria italica
Seita.1G359700 5.0kb downstream 5.0kb downstream 9763 true scaffold_1: 40997812-41007574 Setaria italica
Seita.1G359700 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 40997812-41002811 Setaria italica
Seita.1G359700 10.0kb upstream 10.0kb upstream 14763 true scaffold_1: 41002812-41017574 Setaria italica
Seita.1G359700 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 41007575-41017574 Setaria italica
Seita.1G359700 10.0kb downstream 10.0kb downstream 14763 true scaffold_1: 40992812-41007574 Setaria italica
Seita.1G359700 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 40992812-41002811 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181442 5267 Panicoideae View MSA
124572290 5269 Grass View MSA
122051014 5273 Angiosperm View MSA
121350403 5274 Embryophyte View MSA
123428253 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.95        
cufflinks 2.313        
cufflinks 1.16        
cufflinks 0.814       Low
cufflinks 0.964       Low
cufflinks 2.029        
cufflinks 1.345        
cufflinks 2.135        
cufflinks 1.143        
cufflinks 1.505        
cufflinks 2.08        
cufflinks 2.184        
cufflinks 2.448        
cufflinks 1.923        
cufflinks 3.689       High
cufflinks 1.439        
cufflinks 2.692       High
cufflinks 0.832       Low
cufflinks 1.377        
cufflinks 3.445       High

0 Strain