Gene : Seita.1G362300 S. italica v2.2
Defline:  (1 of 1) PTHR22847//PTHR22847:SF473 - WD40 REPEAT PROTEIN Genomic Order:  3623
Name:  ? Seita.1G362300 Secondary Identifier:  ? PAC:32695337
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G362300 0.5kb upstream 0.5kb upstream 8579 true scaffold_1: 41151299-41159877 Setaria italica
Seita.1G362300 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 41159378-41159877 Setaria italica
Seita.1G362300 0.5kb downstream 0.5kb downstream 8579 true scaffold_1: 41150799-41159377 Setaria italica
Seita.1G362300 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 41150799-41151298 Setaria italica
Seita.1G362300 1.0kb upstream 1.0kb upstream 9079 true scaffold_1: 41151299-41160377 Setaria italica
Seita.1G362300 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 41159378-41160377 Setaria italica
Seita.1G362300 1.0kb downstream 1.0kb downstream 9079 true scaffold_1: 41150299-41159377 Setaria italica
Seita.1G362300 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 41150299-41151298 Setaria italica
Seita.1G362300 2.0kb upstream 2.0kb upstream 10079 true scaffold_1: 41151299-41161377 Setaria italica
Seita.1G362300 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 41159378-41161377 Setaria italica
Seita.1G362300 2.0kb downstream 2.0kb downstream 10079 true scaffold_1: 41149299-41159377 Setaria italica
Seita.1G362300 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 41149299-41151298 Setaria italica
Seita.1G362300 5.0kb upstream 5.0kb upstream 13079 true scaffold_1: 41151299-41164377 Setaria italica
Seita.1G362300 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 41159378-41164377 Setaria italica
Seita.1G362300 5.0kb downstream 5.0kb downstream 13079 true scaffold_1: 41146299-41159377 Setaria italica
Seita.1G362300 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 41146299-41151298 Setaria italica
Seita.1G362300 10.0kb upstream 10.0kb upstream 18079 true scaffold_1: 41151299-41169377 Setaria italica
Seita.1G362300 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 41159378-41169377 Setaria italica
Seita.1G362300 10.0kb downstream 10.0kb downstream 18079 true scaffold_1: 41141299-41159377 Setaria italica
Seita.1G362300 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 41141299-41151298 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191288 5267 Panicoideae View MSA
124580503 5269 Grass View MSA
122046787 5273 Angiosperm View MSA
123429146 5275 Viridiplantae View MSA
121350041 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.895       High
cufflinks 14.022     High High
cufflinks 2.087       Low
cufflinks 1.606       Low
cufflinks 3.219        
cufflinks 12.503       High
cufflinks 9.035        
cufflinks 5.627        
cufflinks 6.457        
cufflinks 7.137        
cufflinks 9.383        
cufflinks 3.333        
cufflinks 4.213        
cufflinks 4.32        
cufflinks 5.328        
cufflinks 7.257        
cufflinks 3.69        
cufflinks 5.785        
cufflinks 2.36       Low
cufflinks 4.132        

0 Strain