Gene : Seita.1G359800 S. italica v2.2
Defline:  (1 of 1) 6.3.1.14 - Diphthine--ammonia ligase / Diphthamide synthetase Genomic Order:  3598
Name:  ? Seita.1G359800 Secondary Identifier:  ? PAC:32696290
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G359800 0.5kb upstream 0.5kb upstream 4794 true scaffold_1: 41007798-41012591 Setaria italica
Seita.1G359800 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 41012092-41012591 Setaria italica
Seita.1G359800 0.5kb downstream 0.5kb downstream 4794 true scaffold_1: 41007298-41012091 Setaria italica
Seita.1G359800 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 41007298-41007797 Setaria italica
Seita.1G359800 1.0kb upstream 1.0kb upstream 5294 true scaffold_1: 41007798-41013091 Setaria italica
Seita.1G359800 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 41012092-41013091 Setaria italica
Seita.1G359800 1.0kb downstream 1.0kb downstream 5294 true scaffold_1: 41006798-41012091 Setaria italica
Seita.1G359800 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 41006798-41007797 Setaria italica
Seita.1G359800 2.0kb upstream 2.0kb upstream 6294 true scaffold_1: 41007798-41014091 Setaria italica
Seita.1G359800 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 41012092-41014091 Setaria italica
Seita.1G359800 2.0kb downstream 2.0kb downstream 6294 true scaffold_1: 41005798-41012091 Setaria italica
Seita.1G359800 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 41005798-41007797 Setaria italica
Seita.1G359800 5.0kb upstream 5.0kb upstream 9294 true scaffold_1: 41007798-41017091 Setaria italica
Seita.1G359800 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 41012092-41017091 Setaria italica
Seita.1G359800 5.0kb downstream 5.0kb downstream 9294 true scaffold_1: 41002798-41012091 Setaria italica
Seita.1G359800 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 41002798-41007797 Setaria italica
Seita.1G359800 10.0kb upstream 10.0kb upstream 14294 true scaffold_1: 41007798-41022091 Setaria italica
Seita.1G359800 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 41012092-41022091 Setaria italica
Seita.1G359800 10.0kb downstream 10.0kb downstream 14294 true scaffold_1: 40997798-41012091 Setaria italica
Seita.1G359800 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 40997798-41007797 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175276 5267 Panicoideae View MSA
124572088 5269 Grass View MSA
122047078 5273 Angiosperm View MSA
121346934 5274 Embryophyte View MSA
123425247 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.927        
cufflinks 5.99        
cufflinks 8.516        
cufflinks 9.174        
cufflinks 8.629        
cufflinks 6.545        
cufflinks 5.839        
cufflinks 4.952        
cufflinks 6.97        
cufflinks 3.953       Low
cufflinks 6.322        
cufflinks 6.431        
cufflinks 5.127        
cufflinks 6.476        
cufflinks 5.371        
cufflinks 9.166        
cufflinks 5.257        
cufflinks 17.728     High High
cufflinks 6.312        
cufflinks 5.162        

0 Strain