Gene : Seita.1G363700 S. italica v2.2
Defline:  (1 of 30) KOG0131 - Splicing factor 3b, subunit 4 Genomic Order:  3637
Name:  ? Seita.1G363700 Secondary Identifier:  ? PAC:32698137
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G363700 0.5kb upstream 0.5kb upstream 3193 true scaffold_1: 41223748-41226940 Setaria italica
Seita.1G363700 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 41223748-41224247 Setaria italica
Seita.1G363700 0.5kb downstream 0.5kb downstream 3193 true scaffold_1: 41224248-41227440 Setaria italica
Seita.1G363700 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 41226941-41227440 Setaria italica
Seita.1G363700 1.0kb upstream 1.0kb upstream 3693 true scaffold_1: 41223248-41226940 Setaria italica
Seita.1G363700 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 41223248-41224247 Setaria italica
Seita.1G363700 1.0kb downstream 1.0kb downstream 3693 true scaffold_1: 41224248-41227940 Setaria italica
Seita.1G363700 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 41226941-41227940 Setaria italica
Seita.1G363700 2.0kb upstream 2.0kb upstream 4693 true scaffold_1: 41222248-41226940 Setaria italica
Seita.1G363700 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 41222248-41224247 Setaria italica
Seita.1G363700 2.0kb downstream 2.0kb downstream 4693 true scaffold_1: 41224248-41228940 Setaria italica
Seita.1G363700 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 41226941-41228940 Setaria italica
Seita.1G363700 5.0kb upstream 5.0kb upstream 7693 true scaffold_1: 41219248-41226940 Setaria italica
Seita.1G363700 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 41219248-41224247 Setaria italica
Seita.1G363700 5.0kb downstream 5.0kb downstream 7693 true scaffold_1: 41224248-41231940 Setaria italica
Seita.1G363700 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 41226941-41231940 Setaria italica
Seita.1G363700 10.0kb upstream 10.0kb upstream 12693 true scaffold_1: 41214248-41226940 Setaria italica
Seita.1G363700 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 41214248-41224247 Setaria italica
Seita.1G363700 10.0kb downstream 10.0kb downstream 12693 true scaffold_1: 41224248-41236940 Setaria italica
Seita.1G363700 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 41226941-41236940 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177800 5267 Panicoideae View MSA
124582535 5269 Grass View MSA
122043782 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121349812 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.762        
cufflinks 3.328        
cufflinks 1.592        
cufflinks 1.188        
cufflinks 5.318        
cufflinks 3.265        
cufflinks 8.198        
cufflinks 8.531        
cufflinks 13.858     High High
cufflinks 2.74        
cufflinks 2.156        
cufflinks 0.025     Low Low
cufflinks 0.237        
cufflinks 2.9        
cufflinks 0.058     Low Low
cufflinks 6.844        
cufflinks 0.037     Low Low
cufflinks 1.514        
cufflinks 2.996        
cufflinks 0.057     Low Low

0 Strain