Gene : Seita.1G365300 S. italica v2.2
Genomic Order:  3653 Name:  ? Seita.1G365300
Secondary Identifier:  ? PAC:32696341
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G365300 0.5kb upstream 0.5kb upstream 2795 true scaffold_1: 41319394-41322188 Setaria italica
Seita.1G365300 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 41321689-41322188 Setaria italica
Seita.1G365300 0.5kb downstream 0.5kb downstream 2795 true scaffold_1: 41318894-41321688 Setaria italica
Seita.1G365300 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 41318894-41319393 Setaria italica
Seita.1G365300 1.0kb upstream 1.0kb upstream 3295 true scaffold_1: 41319394-41322688 Setaria italica
Seita.1G365300 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 41321689-41322688 Setaria italica
Seita.1G365300 1.0kb downstream 1.0kb downstream 3295 true scaffold_1: 41318394-41321688 Setaria italica
Seita.1G365300 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 41318394-41319393 Setaria italica
Seita.1G365300 2.0kb upstream 2.0kb upstream 4295 true scaffold_1: 41319394-41323688 Setaria italica
Seita.1G365300 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 41321689-41323688 Setaria italica
Seita.1G365300 2.0kb downstream 2.0kb downstream 4295 true scaffold_1: 41317394-41321688 Setaria italica
Seita.1G365300 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 41317394-41319393 Setaria italica
Seita.1G365300 5.0kb upstream 5.0kb upstream 7295 true scaffold_1: 41319394-41326688 Setaria italica
Seita.1G365300 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 41321689-41326688 Setaria italica
Seita.1G365300 5.0kb downstream 5.0kb downstream 7295 true scaffold_1: 41314394-41321688 Setaria italica
Seita.1G365300 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 41314394-41319393 Setaria italica
Seita.1G365300 10.0kb upstream 10.0kb upstream 12295 true scaffold_1: 41319394-41331688 Setaria italica
Seita.1G365300 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 41321689-41331688 Setaria italica
Seita.1G365300 10.0kb downstream 10.0kb downstream 12295 true scaffold_1: 41309394-41321688 Setaria italica
Seita.1G365300 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 41309394-41319393 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179598 5267 Panicoideae View MSA
124574802 5269 Grass View MSA
122042241 5273 Angiosperm View MSA
121345481 5274 Embryophyte View MSA
123380226 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.368        
cufflinks 4.972       High
cufflinks 1.692       Low
cufflinks 1.989       Low
cufflinks 1.951       Low
cufflinks 3.659        
cufflinks 3.312        
cufflinks 3.114        
cufflinks 2.419        
cufflinks 3.941        
cufflinks 3.71        
cufflinks 4.62       High
cufflinks 4.777       High
cufflinks 1.592       Low
cufflinks 3.934        
cufflinks 4.038        
cufflinks 3.513        
cufflinks 4.409        
cufflinks 2.697        
cufflinks 3.643        

0 Strain