Gene : Seita.1G368000 S. italica v2.2
Defline:  (1 of 1) PTHR22883:SF19 - PROTEIN S-ACYLTRANSFERASE 15-RELATED Genomic Order:  3680
Name:  ? Seita.1G368000 Secondary Identifier:  ? PAC:32697051
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G368000 0.5kb upstream 0.5kb upstream 3393 true scaffold_1: 41487456-41490848 Setaria italica
Seita.1G368000 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 41487456-41487955 Setaria italica
Seita.1G368000 0.5kb downstream 0.5kb downstream 3393 true scaffold_1: 41487956-41491348 Setaria italica
Seita.1G368000 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 41490849-41491348 Setaria italica
Seita.1G368000 1.0kb upstream 1.0kb upstream 3893 true scaffold_1: 41486956-41490848 Setaria italica
Seita.1G368000 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 41486956-41487955 Setaria italica
Seita.1G368000 1.0kb downstream 1.0kb downstream 3893 true scaffold_1: 41487956-41491848 Setaria italica
Seita.1G368000 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 41490849-41491848 Setaria italica
Seita.1G368000 2.0kb upstream 2.0kb upstream 4893 true scaffold_1: 41485956-41490848 Setaria italica
Seita.1G368000 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 41485956-41487955 Setaria italica
Seita.1G368000 2.0kb downstream 2.0kb downstream 4893 true scaffold_1: 41487956-41492848 Setaria italica
Seita.1G368000 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 41490849-41492848 Setaria italica
Seita.1G368000 5.0kb upstream 5.0kb upstream 7893 true scaffold_1: 41482956-41490848 Setaria italica
Seita.1G368000 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 41482956-41487955 Setaria italica
Seita.1G368000 5.0kb downstream 5.0kb downstream 7893 true scaffold_1: 41487956-41495848 Setaria italica
Seita.1G368000 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 41490849-41495848 Setaria italica
Seita.1G368000 10.0kb upstream 10.0kb upstream 12893 true scaffold_1: 41477956-41490848 Setaria italica
Seita.1G368000 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 41477956-41487955 Setaria italica
Seita.1G368000 10.0kb downstream 10.0kb downstream 12893 true scaffold_1: 41487956-41500848 Setaria italica
Seita.1G368000 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 41490849-41500848 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176901 5267 Panicoideae View MSA
124570835 5269 Grass View MSA
122049119 5273 Angiosperm View MSA
121349855 5274 Embryophyte View MSA
123428148 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.276        
cufflinks 3.974        
cufflinks 1.17       Low
cufflinks 1.908       Low
cufflinks 1.4       Low
cufflinks 3.699        
cufflinks 2.997        
cufflinks 3.847        
cufflinks 2.315        
cufflinks 4.698       High
cufflinks 3.054        
cufflinks 4.743       High
cufflinks 4.227        
cufflinks 1.69       Low
cufflinks 3.896        
cufflinks 3.302        
cufflinks 4.625        
cufflinks 3.198        
cufflinks 1.941       Low
cufflinks 4.542        

0 Strain