Gene : Seita.1G368100 S. italica v2.2
Defline:  (1 of 1) PTHR10438:SF297 - THIOREDOXIN-LIKE 3-2, CHLOROPLASTIC Genomic Order:  3681
Name:  ? Seita.1G368100 Secondary Identifier:  ? PAC:32697481
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica THIOREDOX-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G368100 0.5kb upstream 0.5kb upstream 3028 true scaffold_1: 41490447-41493474 Setaria italica
Seita.1G368100 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 41490447-41490946 Setaria italica
Seita.1G368100 0.5kb downstream 0.5kb downstream 3028 true scaffold_1: 41490947-41493974 Setaria italica
Seita.1G368100 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 41493475-41493974 Setaria italica
Seita.1G368100 1.0kb upstream 1.0kb upstream 3528 true scaffold_1: 41489947-41493474 Setaria italica
Seita.1G368100 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 41489947-41490946 Setaria italica
Seita.1G368100 1.0kb downstream 1.0kb downstream 3528 true scaffold_1: 41490947-41494474 Setaria italica
Seita.1G368100 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 41493475-41494474 Setaria italica
Seita.1G368100 2.0kb upstream 2.0kb upstream 4528 true scaffold_1: 41488947-41493474 Setaria italica
Seita.1G368100 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 41488947-41490946 Setaria italica
Seita.1G368100 2.0kb downstream 2.0kb downstream 4528 true scaffold_1: 41490947-41495474 Setaria italica
Seita.1G368100 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 41493475-41495474 Setaria italica
Seita.1G368100 5.0kb upstream 5.0kb upstream 7528 true scaffold_1: 41485947-41493474 Setaria italica
Seita.1G368100 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 41485947-41490946 Setaria italica
Seita.1G368100 5.0kb downstream 5.0kb downstream 7528 true scaffold_1: 41490947-41498474 Setaria italica
Seita.1G368100 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 41493475-41498474 Setaria italica
Seita.1G368100 10.0kb upstream 10.0kb upstream 12528 true scaffold_1: 41480947-41493474 Setaria italica
Seita.1G368100 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 41480947-41490946 Setaria italica
Seita.1G368100 10.0kb downstream 10.0kb downstream 12528 true scaffold_1: 41490947-41503474 Setaria italica
Seita.1G368100 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 41493475-41503474 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122192047 5267 Panicoideae View MSA
124574109 5269 Grass View MSA
122051543 5273 Angiosperm View MSA
121347731 5274 Embryophyte View MSA
123380608 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.771        
cufflinks 3.581        
cufflinks 1.727       Low
cufflinks 3.551        
cufflinks 2.298       Low
cufflinks 4.274        
cufflinks 2.163       Low
cufflinks 3.607        
cufflinks 1.66       Low
cufflinks 5.065        
cufflinks 2.789        
cufflinks 4.858        
cufflinks 5.536       High
cufflinks 2.28       Low
cufflinks 4.694        
cufflinks 3.31        
cufflinks 6.103       High
cufflinks 6.37       High
cufflinks 3.089        
cufflinks 5.044        

0 Strain