Gene : Seita.1G366300 S. italica v2.2
Defline:  (1 of 2) 2.3.1.16 - Acetyl-CoA C-acyltransferase / Beta-ketothiolase Genomic Order:  3663
Name:  ? Seita.1G366300 Secondary Identifier:  ? PAC:32695919
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5136 Setaria italica pathologic  
Sitalica PWY-561 Setaria italica pathologic  
Sitalica PWY-6435 Setaria italica pathologic  
Sitalica PWY-735 Setaria italica pathologic  
Sitalica PWY-7606 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G366300 0.5kb upstream 0.5kb upstream 4307 true scaffold_1: 41405738-41410044 Setaria italica
Seita.1G366300 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 41409545-41410044 Setaria italica
Seita.1G366300 0.5kb downstream 0.5kb downstream 4307 true scaffold_1: 41405238-41409544 Setaria italica
Seita.1G366300 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 41405238-41405737 Setaria italica
Seita.1G366300 1.0kb upstream 1.0kb upstream 4807 true scaffold_1: 41405738-41410544 Setaria italica
Seita.1G366300 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 41409545-41410544 Setaria italica
Seita.1G366300 1.0kb downstream 1.0kb downstream 4807 true scaffold_1: 41404738-41409544 Setaria italica
Seita.1G366300 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 41404738-41405737 Setaria italica
Seita.1G366300 2.0kb upstream 2.0kb upstream 5807 true scaffold_1: 41405738-41411544 Setaria italica
Seita.1G366300 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 41409545-41411544 Setaria italica
Seita.1G366300 2.0kb downstream 2.0kb downstream 5807 true scaffold_1: 41403738-41409544 Setaria italica
Seita.1G366300 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 41403738-41405737 Setaria italica
Seita.1G366300 5.0kb upstream 5.0kb upstream 8807 true scaffold_1: 41405738-41414544 Setaria italica
Seita.1G366300 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 41409545-41414544 Setaria italica
Seita.1G366300 5.0kb downstream 5.0kb downstream 8807 true scaffold_1: 41400738-41409544 Setaria italica
Seita.1G366300 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 41400738-41405737 Setaria italica
Seita.1G366300 10.0kb upstream 10.0kb upstream 13807 true scaffold_1: 41405738-41419544 Setaria italica
Seita.1G366300 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 41409545-41419544 Setaria italica
Seita.1G366300 10.0kb downstream 10.0kb downstream 13807 true scaffold_1: 41395738-41409544 Setaria italica
Seita.1G366300 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 41395738-41405737 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182165 5267 Panicoideae View MSA
124582245 5269 Grass View MSA
122045703 5273 Angiosperm View MSA
121347485 5274 Embryophyte View MSA
123424542 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 126.609     High  
cufflinks 27.534     High Low
cufflinks 231.262     High High
cufflinks 190.555     High High
cufflinks 102.453     High  
cufflinks 29.723     High Low
cufflinks 53.859     High  
cufflinks 76.353     High  
cufflinks 69.309     High  
cufflinks 93.985     High  
cufflinks 107.933     High  
cufflinks 87.678     High  
cufflinks 153.374     High  
cufflinks 240.892     High High
cufflinks 61.265     High  
cufflinks 75.513     High  
cufflinks 48.098     High  
cufflinks 223.54     High High
cufflinks 207.483     High High
cufflinks 43.385     High Low

0 Strain