Gene : Seita.1G369600 S. italica v2.2
Defline:  (1 of 33) PF03195 - Protein of unknown function DUF260 (DUF260) Genomic Order:  3696
Name:  ? Seita.1G369600 Secondary Identifier:  ? PAC:32694187
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G369600 0.5kb upstream 0.5kb upstream 1522 true scaffold_1: 41569535-41571056 Setaria italica
Seita.1G369600 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 41570557-41571056 Setaria italica
Seita.1G369600 0.5kb downstream 0.5kb downstream 1522 true scaffold_1: 41569035-41570556 Setaria italica
Seita.1G369600 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 41569035-41569534 Setaria italica
Seita.1G369600 1.0kb upstream 1.0kb upstream 2022 true scaffold_1: 41569535-41571556 Setaria italica
Seita.1G369600 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 41570557-41571556 Setaria italica
Seita.1G369600 1.0kb downstream 1.0kb downstream 2022 true scaffold_1: 41568535-41570556 Setaria italica
Seita.1G369600 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 41568535-41569534 Setaria italica
Seita.1G369600 2.0kb upstream 2.0kb upstream 3022 true scaffold_1: 41569535-41572556 Setaria italica
Seita.1G369600 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 41570557-41572556 Setaria italica
Seita.1G369600 2.0kb downstream 2.0kb downstream 3022 true scaffold_1: 41567535-41570556 Setaria italica
Seita.1G369600 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 41567535-41569534 Setaria italica
Seita.1G369600 5.0kb upstream 5.0kb upstream 6022 true scaffold_1: 41569535-41575556 Setaria italica
Seita.1G369600 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 41570557-41575556 Setaria italica
Seita.1G369600 5.0kb downstream 5.0kb downstream 6022 true scaffold_1: 41564535-41570556 Setaria italica
Seita.1G369600 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 41564535-41569534 Setaria italica
Seita.1G369600 10.0kb upstream 10.0kb upstream 11022 true scaffold_1: 41569535-41580556 Setaria italica
Seita.1G369600 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 41570557-41580556 Setaria italica
Seita.1G369600 10.0kb downstream 10.0kb downstream 11022 true scaffold_1: 41559535-41570556 Setaria italica
Seita.1G369600 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 41559535-41569534 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027059 5273 Angiosperm View MSA
122187523 5267 Panicoideae View MSA
124582582 5269 Grass View MSA
121351593 5274 Embryophyte View MSA
123382239 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.034     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 2.663       High
cufflinks 0.276        
cufflinks 0.291        
cufflinks 0.164     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.291        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.388        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.479        

0 Strain