Gene : Seita.1G368400 S. italica v2.2
Defline:  (1 of 1) PTHR12419//PTHR12419:SF23 - OTU DOMAIN CONTAINING PROTEIN Genomic Order:  3684
Name:  ? Seita.1G368400 Secondary Identifier:  ? PAC:32695229
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G368400 0.5kb upstream 0.5kb upstream 4447 true scaffold_1: 41517388-41521834 Setaria italica
Seita.1G368400 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 41521335-41521834 Setaria italica
Seita.1G368400 0.5kb downstream 0.5kb downstream 4447 true scaffold_1: 41516888-41521334 Setaria italica
Seita.1G368400 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 41516888-41517387 Setaria italica
Seita.1G368400 1.0kb upstream 1.0kb upstream 4947 true scaffold_1: 41517388-41522334 Setaria italica
Seita.1G368400 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 41521335-41522334 Setaria italica
Seita.1G368400 1.0kb downstream 1.0kb downstream 4947 true scaffold_1: 41516388-41521334 Setaria italica
Seita.1G368400 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 41516388-41517387 Setaria italica
Seita.1G368400 2.0kb upstream 2.0kb upstream 5947 true scaffold_1: 41517388-41523334 Setaria italica
Seita.1G368400 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 41521335-41523334 Setaria italica
Seita.1G368400 2.0kb downstream 2.0kb downstream 5947 true scaffold_1: 41515388-41521334 Setaria italica
Seita.1G368400 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 41515388-41517387 Setaria italica
Seita.1G368400 5.0kb upstream 5.0kb upstream 8947 true scaffold_1: 41517388-41526334 Setaria italica
Seita.1G368400 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 41521335-41526334 Setaria italica
Seita.1G368400 5.0kb downstream 5.0kb downstream 8947 true scaffold_1: 41512388-41521334 Setaria italica
Seita.1G368400 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 41512388-41517387 Setaria italica
Seita.1G368400 10.0kb upstream 10.0kb upstream 13947 true scaffold_1: 41517388-41531334 Setaria italica
Seita.1G368400 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 41521335-41531334 Setaria italica
Seita.1G368400 10.0kb downstream 10.0kb downstream 13947 true scaffold_1: 41507388-41521334 Setaria italica
Seita.1G368400 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 41507388-41517387 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180936 5267 Panicoideae View MSA
124577509 5269 Grass View MSA
122042328 5273 Angiosperm View MSA
121348332 5274 Embryophyte View MSA
123428461 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.374        
cufflinks 9.294       Low
cufflinks 105.696     High High
cufflinks 109.639     High High
cufflinks 65.365     High  
cufflinks 10.822       Low
cufflinks 31.654     High  
cufflinks 43.501     High  
cufflinks 19.238     High  
cufflinks 11.832        
cufflinks 9.367       Low
cufflinks 20.084     High  
cufflinks 19.984     High  
cufflinks 57.624     High  
cufflinks 11.525        
cufflinks 74.801     High High
cufflinks 23.781     High  
cufflinks 42.271     High  
cufflinks 126.143     High High
cufflinks 8.181       Low

0 Strain