Gene : Seita.1G368800 S. italica v2.2
Defline:  (1 of 1) PTHR20922:SF13 - DNL-TYPE ZINC FINGER PROTEIN Genomic Order:  3688
Name:  ? Seita.1G368800 Secondary Identifier:  ? PAC:32697904
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G368800 0.5kb upstream 0.5kb upstream 2036 true scaffold_1: 41537054-41539089 Setaria italica
Seita.1G368800 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 41538590-41539089 Setaria italica
Seita.1G368800 0.5kb downstream 0.5kb downstream 2036 true scaffold_1: 41536554-41538589 Setaria italica
Seita.1G368800 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 41536554-41537053 Setaria italica
Seita.1G368800 1.0kb upstream 1.0kb upstream 2536 true scaffold_1: 41537054-41539589 Setaria italica
Seita.1G368800 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 41538590-41539589 Setaria italica
Seita.1G368800 1.0kb downstream 1.0kb downstream 2536 true scaffold_1: 41536054-41538589 Setaria italica
Seita.1G368800 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 41536054-41537053 Setaria italica
Seita.1G368800 2.0kb upstream 2.0kb upstream 3536 true scaffold_1: 41537054-41540589 Setaria italica
Seita.1G368800 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 41538590-41540589 Setaria italica
Seita.1G368800 2.0kb downstream 2.0kb downstream 3536 true scaffold_1: 41535054-41538589 Setaria italica
Seita.1G368800 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 41535054-41537053 Setaria italica
Seita.1G368800 5.0kb upstream 5.0kb upstream 6536 true scaffold_1: 41537054-41543589 Setaria italica
Seita.1G368800 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 41538590-41543589 Setaria italica
Seita.1G368800 5.0kb downstream 5.0kb downstream 6536 true scaffold_1: 41532054-41538589 Setaria italica
Seita.1G368800 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 41532054-41537053 Setaria italica
Seita.1G368800 10.0kb upstream 10.0kb upstream 11536 true scaffold_1: 41537054-41548589 Setaria italica
Seita.1G368800 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 41538590-41548589 Setaria italica
Seita.1G368800 10.0kb downstream 10.0kb downstream 11536 true scaffold_1: 41527054-41538589 Setaria italica
Seita.1G368800 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 41527054-41537053 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175681 5267 Panicoideae View MSA
124572960 5269 Grass View MSA
122044958 5273 Angiosperm View MSA
121348718 5274 Embryophyte View MSA
123424658 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.251       Low
cufflinks 3.786        
cufflinks 5.204        
cufflinks 4.871        
cufflinks 4.419        
cufflinks 3.842        
cufflinks 2.962        
cufflinks 5.344        
cufflinks 2.634       Low
cufflinks 6.498       High
cufflinks 2.685       Low
cufflinks 3.463        
cufflinks 3.461        
cufflinks 6.461       High
cufflinks 4.165        
cufflinks 2.737       Low
cufflinks 3.852        
cufflinks 3.819        
cufflinks 6.171       High
cufflinks 3.897        

0 Strain