Gene : Seita.1G372500 S. italica v2.2
Defline:  (1 of 1) PTHR11746//PTHR11746:SF90 - O-METHYLTRANSFERASE Genomic Order:  3725
Name:  ? Seita.1G372500 Secondary Identifier:  ? PAC:32694555
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G372500 0.5kb upstream 0.5kb upstream 2526 true scaffold_1: 41729260-41731785 Setaria italica
Seita.1G372500 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 41729260-41729759 Setaria italica
Seita.1G372500 0.5kb downstream 0.5kb downstream 2526 true scaffold_1: 41729760-41732285 Setaria italica
Seita.1G372500 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 41731786-41732285 Setaria italica
Seita.1G372500 1.0kb upstream 1.0kb upstream 3026 true scaffold_1: 41728760-41731785 Setaria italica
Seita.1G372500 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 41728760-41729759 Setaria italica
Seita.1G372500 1.0kb downstream 1.0kb downstream 3026 true scaffold_1: 41729760-41732785 Setaria italica
Seita.1G372500 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 41731786-41732785 Setaria italica
Seita.1G372500 2.0kb upstream 2.0kb upstream 4026 true scaffold_1: 41727760-41731785 Setaria italica
Seita.1G372500 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 41727760-41729759 Setaria italica
Seita.1G372500 2.0kb downstream 2.0kb downstream 4026 true scaffold_1: 41729760-41733785 Setaria italica
Seita.1G372500 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 41731786-41733785 Setaria italica
Seita.1G372500 5.0kb upstream 5.0kb upstream 7026 true scaffold_1: 41724760-41731785 Setaria italica
Seita.1G372500 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 41724760-41729759 Setaria italica
Seita.1G372500 5.0kb downstream 5.0kb downstream 7026 true scaffold_1: 41729760-41736785 Setaria italica
Seita.1G372500 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 41731786-41736785 Setaria italica
Seita.1G372500 10.0kb upstream 10.0kb upstream 12026 true scaffold_1: 41719760-41731785 Setaria italica
Seita.1G372500 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 41719760-41729759 Setaria italica
Seita.1G372500 10.0kb downstream 10.0kb downstream 12026 true scaffold_1: 41729760-41741785 Setaria italica
Seita.1G372500 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 41731786-41741785 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188246 5267 Panicoideae View MSA
124579108 5269 Grass View MSA
122042759 5273 Angiosperm View MSA
123429068 5275 Viridiplantae View MSA
121310018 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.82        
cufflinks 3.419        
cufflinks 0.579       Low
cufflinks 0.761        
cufflinks 2.217        
cufflinks 5.114       High
cufflinks 2.474        
cufflinks 6.218       High
cufflinks 5.537       High
cufflinks 4.228       High
cufflinks 1.446        
cufflinks 0.368       Low
cufflinks 1.088        
cufflinks 1.351        
cufflinks 0.384       Low
cufflinks 1.091        
cufflinks 0.666        
cufflinks 0.627        
cufflinks 0.881        
cufflinks 1.436        

0 Strain