Gene : Seita.1G376500 S. italica v2.2
Defline:  (1 of 3) 2.5.1.39 - 4-hydroxybenzoate polyprenyltransferase / 4-hydroxybenzoate nonaprenyltransferase Genomic Order:  3765
Name:  ? Seita.1G376500 Secondary Identifier:  ? PAC:32695137
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5871 Setaria italica pathologic  
Sitalica PWY-5872 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G376500 0.5kb upstream 0.5kb upstream 4189 true scaffold_1: 41886267-41890455 Setaria italica
Seita.1G376500 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 41889956-41890455 Setaria italica
Seita.1G376500 0.5kb downstream 0.5kb downstream 4189 true scaffold_1: 41885767-41889955 Setaria italica
Seita.1G376500 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 41885767-41886266 Setaria italica
Seita.1G376500 1.0kb upstream 1.0kb upstream 4689 true scaffold_1: 41886267-41890955 Setaria italica
Seita.1G376500 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 41889956-41890955 Setaria italica
Seita.1G376500 1.0kb downstream 1.0kb downstream 4689 true scaffold_1: 41885267-41889955 Setaria italica
Seita.1G376500 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 41885267-41886266 Setaria italica
Seita.1G376500 2.0kb upstream 2.0kb upstream 5689 true scaffold_1: 41886267-41891955 Setaria italica
Seita.1G376500 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 41889956-41891955 Setaria italica
Seita.1G376500 2.0kb downstream 2.0kb downstream 5689 true scaffold_1: 41884267-41889955 Setaria italica
Seita.1G376500 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 41884267-41886266 Setaria italica
Seita.1G376500 5.0kb upstream 5.0kb upstream 8689 true scaffold_1: 41886267-41894955 Setaria italica
Seita.1G376500 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 41889956-41894955 Setaria italica
Seita.1G376500 5.0kb downstream 5.0kb downstream 8689 true scaffold_1: 41881267-41889955 Setaria italica
Seita.1G376500 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 41881267-41886266 Setaria italica
Seita.1G376500 10.0kb upstream 10.0kb upstream 13689 true scaffold_1: 41886267-41899955 Setaria italica
Seita.1G376500 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 41889956-41899955 Setaria italica
Seita.1G376500 10.0kb downstream 10.0kb downstream 13689 true scaffold_1: 41876267-41889955 Setaria italica
Seita.1G376500 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 41876267-41886266 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179961 5267 Panicoideae View MSA
124571167 5269 Grass View MSA
122042592 5273 Angiosperm View MSA
121344514 5274 Embryophyte View MSA
123428392 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.548        
cufflinks 2.029       High
cufflinks 2.136       High
cufflinks 1.681        
cufflinks 1.39        
cufflinks 2.379       High
cufflinks 1.53        
cufflinks 2.093       High
cufflinks 1.108       Low
cufflinks 1.607        
cufflinks 1.558        
cufflinks 1.54        
cufflinks 1.493        
cufflinks 1.985        
cufflinks 1.677        
cufflinks 1.394        
cufflinks 1.97        
cufflinks 1.44        
cufflinks 1.291       Low
cufflinks 1.693        

0 Strain