Gene : Seita.1G377200 S. italica v2.2
Defline:  (1 of 1) PF11267 - Domain of unknown function (DUF3067) (DUF3067) Genomic Order:  3772
Name:  ? Seita.1G377200 Secondary Identifier:  ? PAC:32694301
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G377200 0.5kb upstream 0.5kb upstream 1280 true scaffold_1: 41926350-41927629 Setaria italica
Seita.1G377200 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 41927130-41927629 Setaria italica
Seita.1G377200 0.5kb downstream 0.5kb downstream 1280 true scaffold_1: 41925850-41927129 Setaria italica
Seita.1G377200 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 41925850-41926349 Setaria italica
Seita.1G377200 1.0kb upstream 1.0kb upstream 1780 true scaffold_1: 41926350-41928129 Setaria italica
Seita.1G377200 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 41927130-41928129 Setaria italica
Seita.1G377200 1.0kb downstream 1.0kb downstream 1780 true scaffold_1: 41925350-41927129 Setaria italica
Seita.1G377200 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 41925350-41926349 Setaria italica
Seita.1G377200 2.0kb upstream 2.0kb upstream 2780 true scaffold_1: 41926350-41929129 Setaria italica
Seita.1G377200 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 41927130-41929129 Setaria italica
Seita.1G377200 2.0kb downstream 2.0kb downstream 2780 true scaffold_1: 41924350-41927129 Setaria italica
Seita.1G377200 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 41924350-41926349 Setaria italica
Seita.1G377200 5.0kb upstream 5.0kb upstream 5780 true scaffold_1: 41926350-41932129 Setaria italica
Seita.1G377200 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 41927130-41932129 Setaria italica
Seita.1G377200 5.0kb downstream 5.0kb downstream 5780 true scaffold_1: 41921350-41927129 Setaria italica
Seita.1G377200 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 41921350-41926349 Setaria italica
Seita.1G377200 10.0kb upstream 10.0kb upstream 10780 true scaffold_1: 41926350-41937129 Setaria italica
Seita.1G377200 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 41927130-41937129 Setaria italica
Seita.1G377200 10.0kb downstream 10.0kb downstream 10780 true scaffold_1: 41916350-41927129 Setaria italica
Seita.1G377200 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 41916350-41926349 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181267 5267 Panicoideae View MSA
124582564 5269 Grass View MSA
122041717 5273 Angiosperm View MSA
121344218 5274 Embryophyte View MSA
123426172 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.444        
cufflinks 10.189        
cufflinks 38.235     High  
cufflinks 54.611     High  
cufflinks 50.857     High  
cufflinks 10.372        
cufflinks 46.449     High  
cufflinks 35.676     High  
cufflinks 19.415     High  
cufflinks 5.775        
cufflinks 6.114        
cufflinks 1.289       Low
cufflinks 1.731       Low
cufflinks 27.969     High  
cufflinks 2.309       Low
cufflinks 91.431     High High
cufflinks 0.898       Low
cufflinks 34.918     High  
cufflinks 104.477     High High
cufflinks 1.558       Low

0 Strain