Gene : Seita.1G377300 S. italica v2.2
Defline:  (1 of 1) K05752 - chromosome 3 open reading frame 10 Genomic Order:  3773
Name:  ? Seita.1G377300 Secondary Identifier:  ? PAC:32694402
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G377300 0.5kb upstream 0.5kb upstream 3504 true scaffold_1: 41927113-41930616 Setaria italica
Seita.1G377300 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 41930117-41930616 Setaria italica
Seita.1G377300 0.5kb downstream 0.5kb downstream 3504 true scaffold_1: 41926613-41930116 Setaria italica
Seita.1G377300 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 41926613-41927112 Setaria italica
Seita.1G377300 1.0kb upstream 1.0kb upstream 4004 true scaffold_1: 41927113-41931116 Setaria italica
Seita.1G377300 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 41930117-41931116 Setaria italica
Seita.1G377300 1.0kb downstream 1.0kb downstream 4004 true scaffold_1: 41926113-41930116 Setaria italica
Seita.1G377300 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 41926113-41927112 Setaria italica
Seita.1G377300 2.0kb upstream 2.0kb upstream 5004 true scaffold_1: 41927113-41932116 Setaria italica
Seita.1G377300 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 41930117-41932116 Setaria italica
Seita.1G377300 2.0kb downstream 2.0kb downstream 5004 true scaffold_1: 41925113-41930116 Setaria italica
Seita.1G377300 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 41925113-41927112 Setaria italica
Seita.1G377300 5.0kb upstream 5.0kb upstream 8004 true scaffold_1: 41927113-41935116 Setaria italica
Seita.1G377300 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 41930117-41935116 Setaria italica
Seita.1G377300 5.0kb downstream 5.0kb downstream 8004 true scaffold_1: 41922113-41930116 Setaria italica
Seita.1G377300 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 41922113-41927112 Setaria italica
Seita.1G377300 10.0kb upstream 10.0kb upstream 13004 true scaffold_1: 41927113-41940116 Setaria italica
Seita.1G377300 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 41930117-41940116 Setaria italica
Seita.1G377300 10.0kb downstream 10.0kb downstream 13004 true scaffold_1: 41917113-41930116 Setaria italica
Seita.1G377300 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 41917113-41927112 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185805 5267 Panicoideae View MSA
124581070 5269 Grass View MSA
122047228 5273 Angiosperm View MSA
121347694 5274 Embryophyte View MSA
123380603 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.742        
cufflinks 12.251       High
cufflinks 5.294       Low
cufflinks 6.124       Low
cufflinks 6.558        
cufflinks 11.411       High
cufflinks 7.647        
cufflinks 8.582        
cufflinks 6.972        
cufflinks 9.85        
cufflinks 7.703        
cufflinks 9.012        
cufflinks 11.549       High
cufflinks 6.637        
cufflinks 9.709        
cufflinks 9.391        
cufflinks 13.026       High
cufflinks 5.646       Low
cufflinks 7.528        
cufflinks 11.555       High

0 Strain