Gene : Seita.1G378300 S. italica v2.2
Defline:  (1 of 2) PF02620 - Uncharacterized ACR, COG1399 (DUF177) Genomic Order:  3783
Name:  ? Seita.1G378300 Secondary Identifier:  ? PAC:32698488
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G378300 0.5kb upstream 0.5kb upstream 4085 true scaffold_1: 41979786-41983870 Setaria italica
Seita.1G378300 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 41983371-41983870 Setaria italica
Seita.1G378300 0.5kb downstream 0.5kb downstream 4085 true scaffold_1: 41979286-41983370 Setaria italica
Seita.1G378300 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 41979286-41979785 Setaria italica
Seita.1G378300 1.0kb upstream 1.0kb upstream 4585 true scaffold_1: 41979786-41984370 Setaria italica
Seita.1G378300 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 41983371-41984370 Setaria italica
Seita.1G378300 1.0kb downstream 1.0kb downstream 4585 true scaffold_1: 41978786-41983370 Setaria italica
Seita.1G378300 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 41978786-41979785 Setaria italica
Seita.1G378300 2.0kb upstream 2.0kb upstream 5585 true scaffold_1: 41979786-41985370 Setaria italica
Seita.1G378300 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 41983371-41985370 Setaria italica
Seita.1G378300 2.0kb downstream 2.0kb downstream 5585 true scaffold_1: 41977786-41983370 Setaria italica
Seita.1G378300 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 41977786-41979785 Setaria italica
Seita.1G378300 5.0kb upstream 5.0kb upstream 8585 true scaffold_1: 41979786-41988370 Setaria italica
Seita.1G378300 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 41983371-41988370 Setaria italica
Seita.1G378300 5.0kb downstream 5.0kb downstream 8585 true scaffold_1: 41974786-41983370 Setaria italica
Seita.1G378300 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 41974786-41979785 Setaria italica
Seita.1G378300 10.0kb upstream 10.0kb upstream 13585 true scaffold_1: 41979786-41993370 Setaria italica
Seita.1G378300 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 41983371-41993370 Setaria italica
Seita.1G378300 10.0kb downstream 10.0kb downstream 13585 true scaffold_1: 41969786-41983370 Setaria italica
Seita.1G378300 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 41969786-41979785 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183621 5267 Panicoideae View MSA
124577279 5269 Grass View MSA
122051135 5273 Angiosperm View MSA
121345181 5274 Embryophyte View MSA
123380171 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.443        
cufflinks 5.122        
cufflinks 5.429        
cufflinks 3.424        
cufflinks 7.307        
cufflinks 5.116        
cufflinks 11.551       High
cufflinks 13.415     High High
cufflinks 16.241     High High
cufflinks 4.015        
cufflinks 3.255        
cufflinks 0.766       Low
cufflinks 1.004       Low
cufflinks 10.191        
cufflinks 1.08       Low
cufflinks 11.831       High
cufflinks 1.252       Low
cufflinks 3.207        
cufflinks 4.92        
cufflinks 1.122       Low

0 Strain