Gene : Seita.1G379900 S. italica v2.2
Defline:  (1 of 7) PF05542 - Protein of unknown function (DUF760) (DUF760) Genomic Order:  3799
Name:  ? Seita.1G379900 Secondary Identifier:  ? PAC:32697994
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G379900 0.5kb upstream 0.5kb upstream 3358 true scaffold_1: 42047184-42050541 Setaria italica
Seita.1G379900 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 42050042-42050541 Setaria italica
Seita.1G379900 0.5kb downstream 0.5kb downstream 3358 true scaffold_1: 42046684-42050041 Setaria italica
Seita.1G379900 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 42046684-42047183 Setaria italica
Seita.1G379900 1.0kb upstream 1.0kb upstream 3858 true scaffold_1: 42047184-42051041 Setaria italica
Seita.1G379900 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 42050042-42051041 Setaria italica
Seita.1G379900 1.0kb downstream 1.0kb downstream 3858 true scaffold_1: 42046184-42050041 Setaria italica
Seita.1G379900 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 42046184-42047183 Setaria italica
Seita.1G379900 2.0kb upstream 2.0kb upstream 4858 true scaffold_1: 42047184-42052041 Setaria italica
Seita.1G379900 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 42050042-42052041 Setaria italica
Seita.1G379900 2.0kb downstream 2.0kb downstream 4858 true scaffold_1: 42045184-42050041 Setaria italica
Seita.1G379900 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 42045184-42047183 Setaria italica
Seita.1G379900 5.0kb upstream 5.0kb upstream 7858 true scaffold_1: 42047184-42055041 Setaria italica
Seita.1G379900 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 42050042-42055041 Setaria italica
Seita.1G379900 5.0kb downstream 5.0kb downstream 7858 true scaffold_1: 42042184-42050041 Setaria italica
Seita.1G379900 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 42042184-42047183 Setaria italica
Seita.1G379900 10.0kb upstream 10.0kb upstream 12858 true scaffold_1: 42047184-42060041 Setaria italica
Seita.1G379900 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 42050042-42060041 Setaria italica
Seita.1G379900 10.0kb downstream 10.0kb downstream 12858 true scaffold_1: 42037184-42050041 Setaria italica
Seita.1G379900 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 42037184-42047183 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185663 5267 Panicoideae View MSA
124585169 5269 Grass View MSA
122047250 5273 Angiosperm View MSA
121350732 5274 Embryophyte View MSA
123426159 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.552        
cufflinks 8.844        
cufflinks 6.601        
cufflinks 5.257        
cufflinks 8.97        
cufflinks 8.071        
cufflinks 15.961     High High
cufflinks 17.154     High High
cufflinks 27.96     High High
cufflinks 4.24        
cufflinks 6.108        
cufflinks 4.203        
cufflinks 2.255       Low
cufflinks 10.001        
cufflinks 4.37        
cufflinks 10.541        
cufflinks 4.108        
cufflinks 7.865        
cufflinks 9.273        
cufflinks 4.027       Low

0 Strain