Gene : Seita.J003600 S. italica v2.2
Defline:  (1 of 1) PTHR13270 - PROTEIN C20ORF116-RELATED Genomic Order:  21
Name:  ? Seita.J003600 Secondary Identifier:  ? PAC:32701713
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.J003600 0.5kb upstream 0.5kb upstream 3692 true scaffold_11: 127632-131323 Setaria italica
Seita.J003600 0.5kb upstream 0.5kb upstream 500 false scaffold_11: 127632-128131 Setaria italica
Seita.J003600 0.5kb downstream 0.5kb downstream 3692 true scaffold_11: 128132-131823 Setaria italica
Seita.J003600 0.5kb downstream 0.5kb downstream 500 false scaffold_11: 131324-131823 Setaria italica
Seita.J003600 1.0kb upstream 1.0kb upstream 4192 true scaffold_11: 127132-131323 Setaria italica
Seita.J003600 1.0kb upstream 1.0kb upstream 1000 false scaffold_11: 127132-128131 Setaria italica
Seita.J003600 1.0kb downstream 1.0kb downstream 4192 true scaffold_11: 128132-132323 Setaria italica
Seita.J003600 1.0kb downstream 1.0kb downstream 1000 false scaffold_11: 131324-132323 Setaria italica
Seita.J003600 2.0kb upstream 2.0kb upstream 5192 true scaffold_11: 126132-131323 Setaria italica
Seita.J003600 2.0kb upstream 2.0kb upstream 2000 false scaffold_11: 126132-128131 Setaria italica
Seita.J003600 2.0kb downstream 2.0kb downstream 5192 true scaffold_11: 128132-133323 Setaria italica
Seita.J003600 2.0kb downstream 2.0kb downstream 2000 false scaffold_11: 131324-133323 Setaria italica
Seita.J003600 5.0kb upstream 5.0kb upstream 8192 true scaffold_11: 123132-131323 Setaria italica
Seita.J003600 5.0kb upstream 5.0kb upstream 5000 false scaffold_11: 123132-128131 Setaria italica
Seita.J003600 5.0kb downstream 5.0kb downstream 8192 true scaffold_11: 128132-136323 Setaria italica
Seita.J003600 5.0kb downstream 5.0kb downstream 5000 false scaffold_11: 131324-136323 Setaria italica
Seita.J003600 10.0kb upstream 10.0kb upstream 13192 true scaffold_11: 118132-131323 Setaria italica
Seita.J003600 10.0kb upstream 10.0kb upstream 10000 false scaffold_11: 118132-128131 Setaria italica
Seita.J003600 10.0kb downstream 10.0kb downstream 13192 true scaffold_11: 128132-141323 Setaria italica
Seita.J003600 10.0kb downstream 10.0kb downstream 10000 false scaffold_11: 131324-141323 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182120 5267 Panicoideae View MSA
124576970 5269 Grass View MSA
122042845 5273 Angiosperm View MSA
121345530 5274 Embryophyte View MSA
123425622 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.011        
cufflinks 11.217       High
cufflinks 6.202       Low
cufflinks 7.919        
cufflinks 5.729       Low
cufflinks 11.552       High
cufflinks 6.685        
cufflinks 8.595        
cufflinks 6.803        
cufflinks 6.241       Low
cufflinks 7.062        
cufflinks 9.972        
cufflinks 8.554        
cufflinks 7.544        
cufflinks 10.001        
cufflinks 7.62        
cufflinks 11.145       High
cufflinks 8.208        
cufflinks 5.435       Low
cufflinks 10.425       High

0 Strain