Gene : Seita.J003800 S. italica v2.2
Defline:  (1 of 2) PTHR22792:SF62 - LA-RELATED PROTEIN 6C Genomic Order:  23
Name:  ? Seita.J003800 Secondary Identifier:  ? PAC:32701717
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.J003800 0.5kb upstream 0.5kb upstream 2696 true scaffold_11: 138974-141669 Setaria italica
Seita.J003800 0.5kb upstream 0.5kb upstream 500 false scaffold_11: 138974-139473 Setaria italica
Seita.J003800 0.5kb downstream 0.5kb downstream 2696 true scaffold_11: 139474-142169 Setaria italica
Seita.J003800 0.5kb downstream 0.5kb downstream 500 false scaffold_11: 141670-142169 Setaria italica
Seita.J003800 1.0kb upstream 1.0kb upstream 3196 true scaffold_11: 138474-141669 Setaria italica
Seita.J003800 1.0kb upstream 1.0kb upstream 1000 false scaffold_11: 138474-139473 Setaria italica
Seita.J003800 1.0kb downstream 1.0kb downstream 3196 true scaffold_11: 139474-142669 Setaria italica
Seita.J003800 1.0kb downstream 1.0kb downstream 1000 false scaffold_11: 141670-142669 Setaria italica
Seita.J003800 2.0kb upstream 2.0kb upstream 4196 true scaffold_11: 137474-141669 Setaria italica
Seita.J003800 2.0kb upstream 2.0kb upstream 2000 false scaffold_11: 137474-139473 Setaria italica
Seita.J003800 2.0kb downstream 2.0kb downstream 4196 true scaffold_11: 139474-143669 Setaria italica
Seita.J003800 2.0kb downstream 2.0kb downstream 2000 false scaffold_11: 141670-143669 Setaria italica
Seita.J003800 5.0kb upstream 5.0kb upstream 7196 true scaffold_11: 134474-141669 Setaria italica
Seita.J003800 5.0kb upstream 5.0kb upstream 5000 false scaffold_11: 134474-139473 Setaria italica
Seita.J003800 5.0kb downstream 5.0kb downstream 7196 true scaffold_11: 139474-146669 Setaria italica
Seita.J003800 5.0kb downstream 5.0kb downstream 5000 false scaffold_11: 141670-146669 Setaria italica
Seita.J003800 10.0kb upstream 10.0kb upstream 12196 true scaffold_11: 129474-141669 Setaria italica
Seita.J003800 10.0kb upstream 10.0kb upstream 10000 false scaffold_11: 129474-139473 Setaria italica
Seita.J003800 10.0kb downstream 10.0kb downstream 12196 true scaffold_11: 139474-151669 Setaria italica
Seita.J003800 10.0kb downstream 10.0kb downstream 10000 false scaffold_11: 141670-151669 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182119 5267 Panicoideae View MSA
124575109 5269 Grass View MSA
122051197 5273 Angiosperm View MSA
121349510 5274 Embryophyte View MSA
123427383 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.009     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.008     Low Low
cufflinks 0.223        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.006     Low Low
cufflinks 0.288       High
cufflinks 0.169     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.078     Low  
cufflinks 0.009     Low Low
cufflinks 0.224        
cufflinks 0.09     Low  
cufflinks 0.087     Low  
cufflinks 0.232        

0 Strain