Gene : Seita.J002200 S. italica v2.2
Defline:  (1 of 109) PF04578//PF13968 - Protein of unknown function, DUF594 (DUF594) // Domain of unknown function (DUF4220) (DUF4220) Genomic Order:  7
Name:  ? Seita.J002200 Secondary Identifier:  ? PAC:32701741
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.J002200 0.5kb upstream 0.5kb upstream 3277 true scaffold_11: 57953-61229 Setaria italica
Seita.J002200 0.5kb upstream 0.5kb upstream 500 false scaffold_11: 57953-58452 Setaria italica
Seita.J002200 0.5kb downstream 0.5kb downstream 3277 true scaffold_11: 58453-61729 Setaria italica
Seita.J002200 0.5kb downstream 0.5kb downstream 500 false scaffold_11: 61230-61729 Setaria italica
Seita.J002200 1.0kb upstream 1.0kb upstream 3777 true scaffold_11: 57453-61229 Setaria italica
Seita.J002200 1.0kb upstream 1.0kb upstream 1000 false scaffold_11: 57453-58452 Setaria italica
Seita.J002200 1.0kb downstream 1.0kb downstream 3777 true scaffold_11: 58453-62229 Setaria italica
Seita.J002200 1.0kb downstream 1.0kb downstream 1000 false scaffold_11: 61230-62229 Setaria italica
Seita.J002200 2.0kb upstream 2.0kb upstream 4777 true scaffold_11: 56453-61229 Setaria italica
Seita.J002200 2.0kb upstream 2.0kb upstream 2000 false scaffold_11: 56453-58452 Setaria italica
Seita.J002200 2.0kb downstream 2.0kb downstream 4777 true scaffold_11: 58453-63229 Setaria italica
Seita.J002200 2.0kb downstream 2.0kb downstream 2000 false scaffold_11: 61230-63229 Setaria italica
Seita.J002200 5.0kb upstream 5.0kb upstream 7777 true scaffold_11: 53453-61229 Setaria italica
Seita.J002200 5.0kb upstream 5.0kb upstream 5000 false scaffold_11: 53453-58452 Setaria italica
Seita.J002200 5.0kb downstream 5.0kb downstream 7777 true scaffold_11: 58453-66229 Setaria italica
Seita.J002200 5.0kb downstream 5.0kb downstream 5000 false scaffold_11: 61230-66229 Setaria italica
Seita.J002200 10.0kb upstream 10.0kb upstream 12777 true scaffold_11: 48453-61229 Setaria italica
Seita.J002200 10.0kb upstream 10.0kb upstream 10000 false scaffold_11: 48453-58452 Setaria italica
Seita.J002200 10.0kb downstream 10.0kb downstream 12777 true scaffold_11: 58453-71229 Setaria italica
Seita.J002200 10.0kb downstream 10.0kb downstream 10000 false scaffold_11: 61230-71229 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029142 5273 Angiosperm View MSA
122183787 5267 Panicoideae View MSA
124590626 5269 Grass View MSA
121350539 5274 Embryophyte View MSA
123381781 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.218        
cufflinks 0.009     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.02     Low  
cufflinks 0.023     Low  
cufflinks 0.017     Low  
cufflinks 0.006     Low Low
cufflinks 0.1     Low  
cufflinks 0.381       High
cufflinks 0.048     Low  
cufflinks 0.133     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.324       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.088     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.217        

0 Strain