Gene : Seita.J006900 S. italica v2.2
Defline:  (1 of 1) PTHR22773:SF88 - NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4 Genomic Order:  12
Name:  ? Seita.J006900 Secondary Identifier:  ? PAC:32701671
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-3781 Setaria italica pathologic  
Sitalica PWY-4302 Setaria italica pathologic  
Sitalica PWY-5083 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.J006900 0.5kb upstream 0.5kb upstream 7286 true scaffold_12: 76758-84043 Setaria italica
Seita.J006900 0.5kb upstream 0.5kb upstream 500 false scaffold_12: 76758-77257 Setaria italica
Seita.J006900 0.5kb downstream 0.5kb downstream 7286 true scaffold_12: 77258-84543 Setaria italica
Seita.J006900 0.5kb downstream 0.5kb downstream 500 false scaffold_12: 84044-84543 Setaria italica
Seita.J006900 1.0kb upstream 1.0kb upstream 7786 true scaffold_12: 76258-84043 Setaria italica
Seita.J006900 1.0kb upstream 1.0kb upstream 1000 false scaffold_12: 76258-77257 Setaria italica
Seita.J006900 1.0kb downstream 1.0kb downstream 7786 true scaffold_12: 77258-85043 Setaria italica
Seita.J006900 1.0kb downstream 1.0kb downstream 1000 false scaffold_12: 84044-85043 Setaria italica
Seita.J006900 2.0kb upstream 2.0kb upstream 8786 true scaffold_12: 75258-84043 Setaria italica
Seita.J006900 2.0kb upstream 2.0kb upstream 2000 false scaffold_12: 75258-77257 Setaria italica
Seita.J006900 2.0kb downstream 2.0kb downstream 8786 true scaffold_12: 77258-86043 Setaria italica
Seita.J006900 2.0kb downstream 2.0kb downstream 2000 false scaffold_12: 84044-86043 Setaria italica
Seita.J006900 5.0kb upstream 5.0kb upstream 11786 true scaffold_12: 72258-84043 Setaria italica
Seita.J006900 5.0kb upstream 5.0kb upstream 5000 false scaffold_12: 72258-77257 Setaria italica
Seita.J006900 5.0kb downstream 5.0kb downstream 11786 true scaffold_12: 77258-89043 Setaria italica
Seita.J006900 5.0kb downstream 5.0kb downstream 5000 false scaffold_12: 84044-89043 Setaria italica
Seita.J006900 10.0kb upstream 10.0kb upstream 16786 true scaffold_12: 67258-84043 Setaria italica
Seita.J006900 10.0kb upstream 10.0kb upstream 10000 false scaffold_12: 67258-77257 Setaria italica
Seita.J006900 10.0kb downstream 10.0kb downstream 16786 true scaffold_12: 77258-94043 Setaria italica
Seita.J006900 10.0kb downstream 10.0kb downstream 10000 false scaffold_12: 84044-94043 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179406 5267 Panicoideae View MSA
124590182 5269 Grass View MSA
122049707 5273 Angiosperm View MSA
121351606 5274 Embryophyte View MSA
123428700 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain