Gene : Seita.J010100 S. italica v2.2
Defline:  (1 of 4) PTHR11993 - NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUNIT Genomic Order:  44
Name:  ? Seita.J010100 Secondary Identifier:  ? PAC:32701679
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-3781 Setaria italica pathologic  
Sitalica PWY-4302 Setaria italica pathologic  
Sitalica PWY-5083 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.J010100 0.5kb upstream 0.5kb upstream 6554 true scaffold_12: 257773-264326 Setaria italica
Seita.J010100 0.5kb upstream 0.5kb upstream 500 false scaffold_12: 257773-258272 Setaria italica
Seita.J010100 0.5kb downstream 0.5kb downstream 6554 true scaffold_12: 258273-264826 Setaria italica
Seita.J010100 0.5kb downstream 0.5kb downstream 500 false scaffold_12: 264327-264826 Setaria italica
Seita.J010100 1.0kb upstream 1.0kb upstream 7054 true scaffold_12: 257273-264326 Setaria italica
Seita.J010100 1.0kb upstream 1.0kb upstream 1000 false scaffold_12: 257273-258272 Setaria italica
Seita.J010100 1.0kb downstream 1.0kb downstream 7054 true scaffold_12: 258273-265326 Setaria italica
Seita.J010100 1.0kb downstream 1.0kb downstream 1000 false scaffold_12: 264327-265326 Setaria italica
Seita.J010100 2.0kb upstream 2.0kb upstream 8054 true scaffold_12: 256273-264326 Setaria italica
Seita.J010100 2.0kb upstream 2.0kb upstream 2000 false scaffold_12: 256273-258272 Setaria italica
Seita.J010100 2.0kb downstream 2.0kb downstream 8054 true scaffold_12: 258273-266326 Setaria italica
Seita.J010100 2.0kb downstream 2.0kb downstream 2000 false scaffold_12: 264327-266326 Setaria italica
Seita.J010100 5.0kb upstream 5.0kb upstream 11054 true scaffold_12: 253273-264326 Setaria italica
Seita.J010100 5.0kb upstream 5.0kb upstream 5000 false scaffold_12: 253273-258272 Setaria italica
Seita.J010100 5.0kb downstream 5.0kb downstream 11054 true scaffold_12: 258273-269326 Setaria italica
Seita.J010100 5.0kb downstream 5.0kb downstream 5000 false scaffold_12: 264327-269326 Setaria italica
Seita.J010100 10.0kb upstream 10.0kb upstream 16054 true scaffold_12: 248273-264326 Setaria italica
Seita.J010100 10.0kb upstream 10.0kb upstream 10000 false scaffold_12: 248273-258272 Setaria italica
Seita.J010100 10.0kb downstream 10.0kb downstream 16054 true scaffold_12: 258273-274326 Setaria italica
Seita.J010100 10.0kb downstream 10.0kb downstream 10000 false scaffold_12: 264327-274326 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121796042 5273 Angiosperm View MSA
122055844 5267 Panicoideae View MSA
124355592 5269 Grass View MSA
121350081 5274 Embryophyte View MSA
123381572 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.003     Low  
cufflinks 0.015     Low  
cufflinks 0.006     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.003     Low  
cufflinks 0.012     Low  
cufflinks 0.014     Low  
cufflinks 0.007     Low  
cufflinks 0.006     Low  
cufflinks 2.469       High
cufflinks 0.051     Low  
cufflinks 0.014     Low  
cufflinks 0.453       High
cufflinks 0.004     Low  
cufflinks 0.02     Low  
cufflinks 0.003     Low  
cufflinks 0.027     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.008     Low  
cufflinks 0.014     Low  

0 Strain