Gene : Seita.J007200 S. italica v2.2
Defline:  (1 of 1) PTHR33269:SF4 - NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 6 Genomic Order:  15
Name:  ? Seita.J007200 Secondary Identifier:  ? PAC:32701633
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-3781 Setaria italica pathologic  
Sitalica PWY-4302 Setaria italica pathologic  
Sitalica PWY-5083 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.J007200 0.5kb upstream 0.5kb upstream 1412 true scaffold_12: 106233-107644 Setaria italica
Seita.J007200 0.5kb upstream 0.5kb upstream 500 false scaffold_12: 106233-106732 Setaria italica
Seita.J007200 0.5kb downstream 0.5kb downstream 1412 true scaffold_12: 106733-108144 Setaria italica
Seita.J007200 0.5kb downstream 0.5kb downstream 500 false scaffold_12: 107645-108144 Setaria italica
Seita.J007200 1.0kb upstream 1.0kb upstream 1912 true scaffold_12: 105733-107644 Setaria italica
Seita.J007200 1.0kb upstream 1.0kb upstream 1000 false scaffold_12: 105733-106732 Setaria italica
Seita.J007200 1.0kb downstream 1.0kb downstream 1912 true scaffold_12: 106733-108644 Setaria italica
Seita.J007200 1.0kb downstream 1.0kb downstream 1000 false scaffold_12: 107645-108644 Setaria italica
Seita.J007200 2.0kb upstream 2.0kb upstream 2912 true scaffold_12: 104733-107644 Setaria italica
Seita.J007200 2.0kb upstream 2.0kb upstream 2000 false scaffold_12: 104733-106732 Setaria italica
Seita.J007200 2.0kb downstream 2.0kb downstream 2912 true scaffold_12: 106733-109644 Setaria italica
Seita.J007200 2.0kb downstream 2.0kb downstream 2000 false scaffold_12: 107645-109644 Setaria italica
Seita.J007200 5.0kb upstream 5.0kb upstream 5912 true scaffold_12: 101733-107644 Setaria italica
Seita.J007200 5.0kb upstream 5.0kb upstream 5000 false scaffold_12: 101733-106732 Setaria italica
Seita.J007200 5.0kb downstream 5.0kb downstream 5912 true scaffold_12: 106733-112644 Setaria italica
Seita.J007200 5.0kb downstream 5.0kb downstream 5000 false scaffold_12: 107645-112644 Setaria italica
Seita.J007200 10.0kb upstream 10.0kb upstream 10912 true scaffold_12: 96733-107644 Setaria italica
Seita.J007200 10.0kb upstream 10.0kb upstream 10000 false scaffold_12: 96733-106732 Setaria italica
Seita.J007200 10.0kb downstream 10.0kb downstream 10912 true scaffold_12: 106733-117644 Setaria italica
Seita.J007200 10.0kb downstream 10.0kb downstream 10000 false scaffold_12: 107645-117644 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026690 5273 Angiosperm View MSA
122191427 5267 Panicoideae View MSA
124580048 5269 Grass View MSA
121350448 5274 Embryophyte View MSA
123381738 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.047     Low Low
cufflinks 0.343        
cufflinks 0.117        
cufflinks 0.089        
cufflinks 0.142        
cufflinks 0.2        
cufflinks 0.307        
cufflinks 0.283        
cufflinks 0.134        
cufflinks 198.472     High High
cufflinks 1.528        
cufflinks 0.474        
cufflinks 43.978     High High
cufflinks 0.111     Low  
cufflinks 0.393        
cufflinks 0.236        
cufflinks 0.552        
cufflinks 0.066     Low  
cufflinks 0.167        
cufflinks 0.263        

0 Strain