Gene : Seita.J007000 S. italica v2.2
Defline:  (1 of 1) PTHR11403 - CYTOCHROME C OXIDASE SUBUNIT III Genomic Order:  13
Name:  ? Seita.J007000 Secondary Identifier:  ? PAC:32701646
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-3781 Setaria italica pathologic  
Sitalica PWY-7279 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.J007000 0.5kb upstream 0.5kb upstream 1696 true scaffold_12: 89431-91126 Setaria italica
Seita.J007000 0.5kb upstream 0.5kb upstream 500 false scaffold_12: 90627-91126 Setaria italica
Seita.J007000 0.5kb downstream 0.5kb downstream 1696 true scaffold_12: 88931-90626 Setaria italica
Seita.J007000 0.5kb downstream 0.5kb downstream 500 false scaffold_12: 88931-89430 Setaria italica
Seita.J007000 1.0kb upstream 1.0kb upstream 2196 true scaffold_12: 89431-91626 Setaria italica
Seita.J007000 1.0kb upstream 1.0kb upstream 1000 false scaffold_12: 90627-91626 Setaria italica
Seita.J007000 1.0kb downstream 1.0kb downstream 2196 true scaffold_12: 88431-90626 Setaria italica
Seita.J007000 1.0kb downstream 1.0kb downstream 1000 false scaffold_12: 88431-89430 Setaria italica
Seita.J007000 2.0kb upstream 2.0kb upstream 3196 true scaffold_12: 89431-92626 Setaria italica
Seita.J007000 2.0kb upstream 2.0kb upstream 2000 false scaffold_12: 90627-92626 Setaria italica
Seita.J007000 2.0kb downstream 2.0kb downstream 3196 true scaffold_12: 87431-90626 Setaria italica
Seita.J007000 2.0kb downstream 2.0kb downstream 2000 false scaffold_12: 87431-89430 Setaria italica
Seita.J007000 5.0kb upstream 5.0kb upstream 6196 true scaffold_12: 89431-95626 Setaria italica
Seita.J007000 5.0kb upstream 5.0kb upstream 5000 false scaffold_12: 90627-95626 Setaria italica
Seita.J007000 5.0kb downstream 5.0kb downstream 6196 true scaffold_12: 84431-90626 Setaria italica
Seita.J007000 5.0kb downstream 5.0kb downstream 5000 false scaffold_12: 84431-89430 Setaria italica
Seita.J007000 10.0kb upstream 10.0kb upstream 11196 true scaffold_12: 89431-100626 Setaria italica
Seita.J007000 10.0kb upstream 10.0kb upstream 10000 false scaffold_12: 90627-100626 Setaria italica
Seita.J007000 10.0kb downstream 10.0kb downstream 11196 true scaffold_12: 79431-90626 Setaria italica
Seita.J007000 10.0kb downstream 10.0kb downstream 10000 false scaffold_12: 79431-89430 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185022 5267 Panicoideae View MSA
124584197 5269 Grass View MSA
122050963 5273 Angiosperm View MSA
121348326 5274 Embryophyte View MSA
123426097 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.48        
cufflinks 0.561        
cufflinks 0.295        
cufflinks 0.24        
cufflinks 0.202        
cufflinks 0.54        
cufflinks 0.384        
cufflinks 0.472        
cufflinks 0.249        
cufflinks 192.374     High High
cufflinks 2.31        
cufflinks 1.492        
cufflinks 66.809     High High
cufflinks 0.275        
cufflinks 0.863        
cufflinks 0.325        
cufflinks 0.849        
cufflinks 0.515        
cufflinks 0.24        
cufflinks 1.034        

0 Strain