Gene : Seita.J008900 S. italica v2.2
Defline:  (1 of 1) PTHR11058:SF11 - NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 3 Genomic Order:  32
Name:  ? Seita.J008900 Secondary Identifier:  ? PAC:32701667
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-3781 Setaria italica pathologic  
Sitalica PWY-4302 Setaria italica pathologic  
Sitalica PWY-5083 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.J008900 0.5kb upstream 0.5kb upstream 857 true scaffold_12: 216151-217007 Setaria italica
Seita.J008900 0.5kb upstream 0.5kb upstream 500 false scaffold_12: 216151-216650 Setaria italica
Seita.J008900 0.5kb downstream 0.5kb downstream 857 true scaffold_12: 216651-217507 Setaria italica
Seita.J008900 0.5kb downstream 0.5kb downstream 500 false scaffold_12: 217008-217507 Setaria italica
Seita.J008900 1.0kb upstream 1.0kb upstream 1357 true scaffold_12: 215651-217007 Setaria italica
Seita.J008900 1.0kb upstream 1.0kb upstream 1000 false scaffold_12: 215651-216650 Setaria italica
Seita.J008900 1.0kb downstream 1.0kb downstream 1357 true scaffold_12: 216651-218007 Setaria italica
Seita.J008900 1.0kb downstream 1.0kb downstream 1000 false scaffold_12: 217008-218007 Setaria italica
Seita.J008900 2.0kb upstream 2.0kb upstream 2357 true scaffold_12: 214651-217007 Setaria italica
Seita.J008900 2.0kb upstream 2.0kb upstream 2000 false scaffold_12: 214651-216650 Setaria italica
Seita.J008900 2.0kb downstream 2.0kb downstream 2357 true scaffold_12: 216651-219007 Setaria italica
Seita.J008900 2.0kb downstream 2.0kb downstream 2000 false scaffold_12: 217008-219007 Setaria italica
Seita.J008900 5.0kb upstream 5.0kb upstream 5357 true scaffold_12: 211651-217007 Setaria italica
Seita.J008900 5.0kb upstream 5.0kb upstream 5000 false scaffold_12: 211651-216650 Setaria italica
Seita.J008900 5.0kb downstream 5.0kb downstream 5357 true scaffold_12: 216651-222007 Setaria italica
Seita.J008900 5.0kb downstream 5.0kb downstream 5000 false scaffold_12: 217008-222007 Setaria italica
Seita.J008900 10.0kb upstream 10.0kb upstream 10357 true scaffold_12: 206651-217007 Setaria italica
Seita.J008900 10.0kb upstream 10.0kb upstream 10000 false scaffold_12: 206651-216650 Setaria italica
Seita.J008900 10.0kb downstream 10.0kb downstream 10357 true scaffold_12: 216651-227007 Setaria italica
Seita.J008900 10.0kb downstream 10.0kb downstream 10000 false scaffold_12: 217008-227007 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029225 5273 Angiosperm View MSA
122192483 5267 Panicoideae View MSA
124591101 5269 Grass View MSA
121348446 5274 Embryophyte View MSA
123425081 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.034     Low Low
cufflinks 1.183        
cufflinks 0.141        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.507        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.068     Low  
cufflinks 0.058     Low  
cufflinks 20.596     High High
cufflinks 0.493        
cufflinks 0.492        
cufflinks 9.411       High
cufflinks 0.067     Low  
cufflinks 0.327        
cufflinks 0.114        
cufflinks 0.412        
cufflinks 0.06     Low  
cufflinks 0.079     Low  
cufflinks 0.384        

0 Strain