Gene : Seita.J008400 S. italica v2.2
Defline:  (1 of 2) PTHR13691:SF19 - 50S RIBOSOMAL PROTEIN L2, CHLOROPLASTIC Genomic Order:  27
Name:  ? Seita.J008400 Secondary Identifier:  ? PAC:32701641
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.J008400 0.5kb upstream 0.5kb upstream 1803 true scaffold_12: 191929-193731 Setaria italica
Seita.J008400 0.5kb upstream 0.5kb upstream 500 false scaffold_12: 191929-192428 Setaria italica
Seita.J008400 0.5kb downstream 0.5kb downstream 1803 true scaffold_12: 192429-194231 Setaria italica
Seita.J008400 0.5kb downstream 0.5kb downstream 500 false scaffold_12: 193732-194231 Setaria italica
Seita.J008400 1.0kb upstream 1.0kb upstream 2303 true scaffold_12: 191429-193731 Setaria italica
Seita.J008400 1.0kb upstream 1.0kb upstream 1000 false scaffold_12: 191429-192428 Setaria italica
Seita.J008400 1.0kb downstream 1.0kb downstream 2303 true scaffold_12: 192429-194731 Setaria italica
Seita.J008400 1.0kb downstream 1.0kb downstream 1000 false scaffold_12: 193732-194731 Setaria italica
Seita.J008400 2.0kb upstream 2.0kb upstream 3303 true scaffold_12: 190429-193731 Setaria italica
Seita.J008400 2.0kb upstream 2.0kb upstream 2000 false scaffold_12: 190429-192428 Setaria italica
Seita.J008400 2.0kb downstream 2.0kb downstream 3303 true scaffold_12: 192429-195731 Setaria italica
Seita.J008400 2.0kb downstream 2.0kb downstream 2000 false scaffold_12: 193732-195731 Setaria italica
Seita.J008400 5.0kb upstream 5.0kb upstream 6303 true scaffold_12: 187429-193731 Setaria italica
Seita.J008400 5.0kb upstream 5.0kb upstream 5000 false scaffold_12: 187429-192428 Setaria italica
Seita.J008400 5.0kb downstream 5.0kb downstream 6303 true scaffold_12: 192429-198731 Setaria italica
Seita.J008400 5.0kb downstream 5.0kb downstream 5000 false scaffold_12: 193732-198731 Setaria italica
Seita.J008400 10.0kb upstream 10.0kb upstream 11303 true scaffold_12: 182429-193731 Setaria italica
Seita.J008400 10.0kb upstream 10.0kb upstream 10000 false scaffold_12: 182429-192428 Setaria italica
Seita.J008400 10.0kb downstream 10.0kb downstream 11303 true scaffold_12: 192429-203731 Setaria italica
Seita.J008400 10.0kb downstream 10.0kb downstream 10000 false scaffold_12: 193732-203731 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185025 5267 Panicoideae View MSA
124590563 5269 Grass View MSA
122049375 5273 Angiosperm View MSA
123428909 5275 Viridiplantae View MSA
121350673 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.009     Low  
cufflinks 0.023     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.018     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.012     Low  
cufflinks 0.572       High
cufflinks 0.126     Low High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.026     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.022     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.016     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain