Gene : Seita.J009300 S. italica v2.2
Defline:  (1 of 1) PTHR11410:SF0 - ATP SYNTHASE SUBUNIT A Genomic Order:  36
Name:  ? Seita.J009300 Secondary Identifier:  ? PAC:32701676
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.J009300 0.5kb upstream 0.5kb upstream 1336 true scaffold_12: 221898-223233 Setaria italica
Seita.J009300 0.5kb upstream 0.5kb upstream 500 false scaffold_12: 222734-223233 Setaria italica
Seita.J009300 0.5kb downstream 0.5kb downstream 1336 true scaffold_12: 221398-222733 Setaria italica
Seita.J009300 0.5kb downstream 0.5kb downstream 500 false scaffold_12: 221398-221897 Setaria italica
Seita.J009300 1.0kb upstream 1.0kb upstream 1836 true scaffold_12: 221898-223733 Setaria italica
Seita.J009300 1.0kb upstream 1.0kb upstream 1000 false scaffold_12: 222734-223733 Setaria italica
Seita.J009300 1.0kb downstream 1.0kb downstream 1836 true scaffold_12: 220898-222733 Setaria italica
Seita.J009300 1.0kb downstream 1.0kb downstream 1000 false scaffold_12: 220898-221897 Setaria italica
Seita.J009300 2.0kb upstream 2.0kb upstream 2836 true scaffold_12: 221898-224733 Setaria italica
Seita.J009300 2.0kb upstream 2.0kb upstream 2000 false scaffold_12: 222734-224733 Setaria italica
Seita.J009300 2.0kb downstream 2.0kb downstream 2836 true scaffold_12: 219898-222733 Setaria italica
Seita.J009300 2.0kb downstream 2.0kb downstream 2000 false scaffold_12: 219898-221897 Setaria italica
Seita.J009300 5.0kb upstream 5.0kb upstream 5836 true scaffold_12: 221898-227733 Setaria italica
Seita.J009300 5.0kb upstream 5.0kb upstream 5000 false scaffold_12: 222734-227733 Setaria italica
Seita.J009300 5.0kb downstream 5.0kb downstream 5836 true scaffold_12: 216898-222733 Setaria italica
Seita.J009300 5.0kb downstream 5.0kb downstream 5000 false scaffold_12: 216898-221897 Setaria italica
Seita.J009300 10.0kb upstream 10.0kb upstream 10836 true scaffold_12: 221898-232733 Setaria italica
Seita.J009300 10.0kb upstream 10.0kb upstream 10000 false scaffold_12: 222734-232733 Setaria italica
Seita.J009300 10.0kb downstream 10.0kb downstream 10836 true scaffold_12: 211898-222733 Setaria italica
Seita.J009300 10.0kb downstream 10.0kb downstream 10000 false scaffold_12: 211898-221897 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027688 5273 Angiosperm View MSA
122179407 5267 Panicoideae View MSA
124581794 5269 Grass View MSA
121350239 5274 Embryophyte View MSA
123428637 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.509        
cufflinks 1.044        
cufflinks 0.599        
cufflinks 0.327        
cufflinks 0.267        
cufflinks 0.915        
cufflinks 0.598        
cufflinks 0.621        
cufflinks 0.35        
cufflinks 55.011     High High
cufflinks 4.004        
cufflinks 0.454        
cufflinks 108.157     High High
cufflinks 0.341        
cufflinks 0.279        
cufflinks 0.751        
cufflinks 0.083     Low Low
cufflinks 0.755        
cufflinks 0.718        
cufflinks 0.167        

0 Strain