Gene : Seita.J015500 S. italica v2.2
Defline:  (1 of 3) PTHR11620//PTHR11620:SF12 - 60S RIBOSOMAL PROTEIN L23A Genomic Order:  29
Name:  ? Seita.J015500 Secondary Identifier:  ? PAC:32706067
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.J015500 0.5kb upstream 0.5kb upstream 782 true scaffold_14: 25461-26242 Setaria italica
Seita.J015500 0.5kb upstream 0.5kb upstream 500 false scaffold_14: 25743-26242 Setaria italica
Seita.J015500 0.5kb downstream 0.5kb downstream 782 true scaffold_14: 24961-25742 Setaria italica
Seita.J015500 0.5kb downstream 0.5kb downstream 500 false scaffold_14: 24961-25460 Setaria italica
Seita.J015500 1.0kb upstream 1.0kb upstream 1282 true scaffold_14: 25461-26742 Setaria italica
Seita.J015500 1.0kb upstream 1.0kb upstream 1000 false scaffold_14: 25743-26742 Setaria italica
Seita.J015500 1.0kb downstream 1.0kb downstream 1282 true scaffold_14: 24461-25742 Setaria italica
Seita.J015500 1.0kb downstream 1.0kb downstream 1000 false scaffold_14: 24461-25460 Setaria italica
Seita.J015500 2.0kb upstream 2.0kb upstream 2282 true scaffold_14: 25461-27742 Setaria italica
Seita.J015500 2.0kb upstream 2.0kb upstream 2000 false scaffold_14: 25743-27742 Setaria italica
Seita.J015500 2.0kb downstream 2.0kb downstream 2282 true scaffold_14: 23461-25742 Setaria italica
Seita.J015500 2.0kb downstream 2.0kb downstream 2000 false scaffold_14: 23461-25460 Setaria italica
Seita.J015500 5.0kb upstream 5.0kb upstream 5282 true scaffold_14: 25461-30742 Setaria italica
Seita.J015500 5.0kb upstream 5.0kb upstream 5000 false scaffold_14: 25743-30742 Setaria italica
Seita.J015500 5.0kb downstream 5.0kb downstream 5282 true scaffold_14: 20461-25742 Setaria italica
Seita.J015500 5.0kb downstream 5.0kb downstream 5000 false scaffold_14: 20461-25460 Setaria italica
Seita.J015500 10.0kb upstream 10.0kb upstream 10282 true scaffold_14: 25461-35742 Setaria italica
Seita.J015500 10.0kb upstream 10.0kb upstream 10000 false scaffold_14: 25743-35742 Setaria italica
Seita.J015500 10.0kb downstream 10.0kb downstream 10282 true scaffold_14: 15461-25742 Setaria italica
Seita.J015500 10.0kb downstream 10.0kb downstream 10000 false scaffold_14: 15461-25460 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028381 5273 Angiosperm View MSA
122191868 5267 Panicoideae View MSA
124590760 5269 Grass View MSA
121297880 5274 Embryophyte View MSA
123335894 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.184        
cufflinks 1.931        
cufflinks 11.394     High  
cufflinks 4.739        
cufflinks 4.014        
cufflinks 1.312        
cufflinks 3.558        
cufflinks 4.098        
cufflinks 3.635        
cufflinks 78.185     High High
cufflinks 28.214     High High
cufflinks 0.234       Low
cufflinks 17.176     High  
cufflinks 18.138     High High
cufflinks 0.557       Low
cufflinks 3.005        
cufflinks 0.377       Low
cufflinks 3.958        
cufflinks 16.337     High  
cufflinks 0.123     Low Low

0 Strain