Gene : Seita.J013500 S. italica v2.2
Defline:  (1 of 2) PTHR36082:SF2 - PHOTOSYSTEM I REACTION CENTER SUBUNIT IX Genomic Order:  9
Name:  ? Seita.J013500 Secondary Identifier:  ? PAC:32706082
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.J013500 0.5kb upstream 0.5kb upstream 629 true scaffold_14: 7258-7886 Setaria italica
Seita.J013500 0.5kb upstream 0.5kb upstream 500 false scaffold_14: 7258-7757 Setaria italica
Seita.J013500 0.5kb downstream 0.5kb downstream 629 true scaffold_14: 7758-8386 Setaria italica
Seita.J013500 0.5kb downstream 0.5kb downstream 500 false scaffold_14: 7887-8386 Setaria italica
Seita.J013500 1.0kb upstream 1.0kb upstream 1129 true scaffold_14: 6758-7886 Setaria italica
Seita.J013500 1.0kb upstream 1.0kb upstream 1000 false scaffold_14: 6758-7757 Setaria italica
Seita.J013500 1.0kb downstream 1.0kb downstream 1129 true scaffold_14: 7758-8886 Setaria italica
Seita.J013500 1.0kb downstream 1.0kb downstream 1000 false scaffold_14: 7887-8886 Setaria italica
Seita.J013500 2.0kb upstream 2.0kb upstream 2129 true scaffold_14: 5758-7886 Setaria italica
Seita.J013500 2.0kb upstream 2.0kb upstream 2000 false scaffold_14: 5758-7757 Setaria italica
Seita.J013500 2.0kb downstream 2.0kb downstream 2129 true scaffold_14: 7758-9886 Setaria italica
Seita.J013500 2.0kb downstream 2.0kb downstream 2000 false scaffold_14: 7887-9886 Setaria italica
Seita.J013500 5.0kb upstream 5.0kb upstream 5129 true scaffold_14: 2758-7886 Setaria italica
Seita.J013500 5.0kb upstream 5.0kb upstream 5000 false scaffold_14: 2758-7757 Setaria italica
Seita.J013500 5.0kb downstream 5.0kb downstream 5129 true scaffold_14: 7758-12886 Setaria italica
Seita.J013500 5.0kb downstream 5.0kb downstream 5000 false scaffold_14: 7887-12886 Setaria italica
Seita.J013500 10.0kb upstream 10.0kb upstream 7886 true scaffold_14: 1-7886 Setaria italica
Seita.J013500 10.0kb upstream 10.0kb upstream 7757 false scaffold_14: 1-7757 Setaria italica
Seita.J013500 10.0kb downstream 10.0kb downstream 10129 true scaffold_14: 7758-17886 Setaria italica
Seita.J013500 10.0kb downstream 10.0kb downstream 10000 false scaffold_14: 7887-17886 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029213 5273 Angiosperm View MSA
122117588 5267 Panicoideae View MSA
124581561 5269 Grass View MSA
121298583 5274 Embryophyte View MSA
123336547 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.349        
cufflinks 2.582        
cufflinks 27.763     High  
cufflinks 41.487     High  
cufflinks 25.085     High  
cufflinks 1.562        
cufflinks 23.806     High  
cufflinks 10.248        
cufflinks 9.684        
cufflinks 312.745     High High
cufflinks 19.654     High  
cufflinks 0.243       Low
cufflinks 6.587        
cufflinks 20.284     High  
cufflinks 0.474       Low
cufflinks 39.944     High  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 90.432     High High
cufflinks 23.198     High  
cufflinks 0.131     Low Low

0 Strain