Gene : Seita.J019500 S. italica v2.2
Defline:  (1 of 1) PTHR10031:SF6 - ATP SYNTHASE SUBUNIT C, CHLOROPLASTIC Genomic Order:  69
Name:  ? Seita.J019500 Secondary Identifier:  ? PAC:32706064
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.J019500 0.5kb upstream 0.5kb upstream 5302 true scaffold_14: 113351-118652 Setaria italica
Seita.J019500 0.5kb upstream 0.5kb upstream 500 false scaffold_14: 113351-113850 Setaria italica
Seita.J019500 0.5kb downstream 0.5kb downstream 5302 true scaffold_14: 113851-119152 Setaria italica
Seita.J019500 0.5kb downstream 0.5kb downstream 500 false scaffold_14: 118653-119152 Setaria italica
Seita.J019500 1.0kb upstream 1.0kb upstream 5802 true scaffold_14: 112851-118652 Setaria italica
Seita.J019500 1.0kb upstream 1.0kb upstream 1000 false scaffold_14: 112851-113850 Setaria italica
Seita.J019500 1.0kb downstream 1.0kb downstream 5802 true scaffold_14: 113851-119652 Setaria italica
Seita.J019500 1.0kb downstream 1.0kb downstream 1000 false scaffold_14: 118653-119652 Setaria italica
Seita.J019500 2.0kb upstream 2.0kb upstream 6802 true scaffold_14: 111851-118652 Setaria italica
Seita.J019500 2.0kb upstream 2.0kb upstream 2000 false scaffold_14: 111851-113850 Setaria italica
Seita.J019500 2.0kb downstream 2.0kb downstream 6802 true scaffold_14: 113851-120652 Setaria italica
Seita.J019500 2.0kb downstream 2.0kb downstream 2000 false scaffold_14: 118653-120652 Setaria italica
Seita.J019500 5.0kb upstream 5.0kb upstream 9802 true scaffold_14: 108851-118652 Setaria italica
Seita.J019500 5.0kb upstream 5.0kb upstream 5000 false scaffold_14: 108851-113850 Setaria italica
Seita.J019500 5.0kb downstream 5.0kb downstream 9802 true scaffold_14: 113851-123652 Setaria italica
Seita.J019500 5.0kb downstream 5.0kb downstream 5000 false scaffold_14: 118653-123652 Setaria italica
Seita.J019500 10.0kb upstream 10.0kb upstream 14802 true scaffold_14: 103851-118652 Setaria italica
Seita.J019500 10.0kb upstream 10.0kb upstream 10000 false scaffold_14: 103851-113850 Setaria italica
Seita.J019500 10.0kb downstream 10.0kb downstream 14802 true scaffold_14: 113851-128652 Setaria italica
Seita.J019500 10.0kb downstream 10.0kb downstream 10000 false scaffold_14: 118653-128652 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028907 5273 Angiosperm View MSA
122198148 5267 Panicoideae View MSA
124587532 5269 Grass View MSA
121351324 5274 Embryophyte View MSA
123428045 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.331        
cufflinks 0.338        
cufflinks 1.466        
cufflinks 1.528        
cufflinks 2.261        
cufflinks 0.237        
cufflinks 1.104        
cufflinks 1.113        
cufflinks 1.468        
cufflinks 39.93     High High
cufflinks 2.445        
cufflinks 0.004     Low Low
cufflinks 1.542        
cufflinks 0.751        
cufflinks 0.12     Low  
cufflinks 0.932        
cufflinks 0.031     Low Low
cufflinks 1.233        
cufflinks 1.495        
cufflinks 0.029     Low Low

0 Strain