Gene : Seita.J019100 S. italica v2.2
Defline:  (1 of 2) PTHR19376:SF38 - DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA'' Genomic Order:  65
Name:  ? Seita.J019100 Secondary Identifier:  ? PAC:32706078
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.J019100 0.5kb upstream 0.5kb upstream 5058 true scaffold_14: 106864-111921 Setaria italica
Seita.J019100 0.5kb upstream 0.5kb upstream 500 false scaffold_14: 106864-107363 Setaria italica
Seita.J019100 0.5kb downstream 0.5kb downstream 5058 true scaffold_14: 107364-112421 Setaria italica
Seita.J019100 0.5kb downstream 0.5kb downstream 500 false scaffold_14: 111922-112421 Setaria italica
Seita.J019100 1.0kb upstream 1.0kb upstream 5558 true scaffold_14: 106364-111921 Setaria italica
Seita.J019100 1.0kb upstream 1.0kb upstream 1000 false scaffold_14: 106364-107363 Setaria italica
Seita.J019100 1.0kb downstream 1.0kb downstream 5558 true scaffold_14: 107364-112921 Setaria italica
Seita.J019100 1.0kb downstream 1.0kb downstream 1000 false scaffold_14: 111922-112921 Setaria italica
Seita.J019100 2.0kb upstream 2.0kb upstream 6558 true scaffold_14: 105364-111921 Setaria italica
Seita.J019100 2.0kb upstream 2.0kb upstream 2000 false scaffold_14: 105364-107363 Setaria italica
Seita.J019100 2.0kb downstream 2.0kb downstream 6558 true scaffold_14: 107364-113921 Setaria italica
Seita.J019100 2.0kb downstream 2.0kb downstream 2000 false scaffold_14: 111922-113921 Setaria italica
Seita.J019100 5.0kb upstream 5.0kb upstream 9558 true scaffold_14: 102364-111921 Setaria italica
Seita.J019100 5.0kb upstream 5.0kb upstream 5000 false scaffold_14: 102364-107363 Setaria italica
Seita.J019100 5.0kb downstream 5.0kb downstream 9558 true scaffold_14: 107364-116921 Setaria italica
Seita.J019100 5.0kb downstream 5.0kb downstream 5000 false scaffold_14: 111922-116921 Setaria italica
Seita.J019100 10.0kb upstream 10.0kb upstream 14558 true scaffold_14: 97364-111921 Setaria italica
Seita.J019100 10.0kb upstream 10.0kb upstream 10000 false scaffold_14: 97364-107363 Setaria italica
Seita.J019100 10.0kb downstream 10.0kb downstream 14558 true scaffold_14: 107364-121921 Setaria italica
Seita.J019100 10.0kb downstream 10.0kb downstream 10000 false scaffold_14: 111922-121921 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191336 5267 Panicoideae View MSA
124591071 5269 Grass View MSA
122050148 5273 Angiosperm View MSA
121311763 5274 Embryophyte View MSA
123426642 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.394        
cufflinks 0.111     Low  
cufflinks 0.453        
cufflinks 0.322        
cufflinks 0.366        
cufflinks 0.084     Low Low
cufflinks 0.344        
cufflinks 0.43        
cufflinks 0.343        
cufflinks 19.769     High High
cufflinks 1.465       High
cufflinks 0.068     Low Low
cufflinks 0.852        
cufflinks 0.993        
cufflinks 0.169        
cufflinks 0.453        
cufflinks 0.085     Low Low
cufflinks 1.255        
cufflinks 0.384        
cufflinks 0.127     Low  

0 Strain