Gene : Seita.J019300 S. italica v2.2
Defline:  (1 of 3) PTHR11410 - ATP SYNTHASE SUBUNIT A Genomic Order:  67
Name:  ? Seita.J019300 Secondary Identifier:  ? PAC:32706075
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-7219 Setaria italica pathologic  
Sitalica PWY-7229 Setaria italica pathologic  
Sitalica PWY-841 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.J019300 0.5kb upstream 0.5kb upstream 755 true scaffold_14: 112853-113607 Setaria italica
Seita.J019300 0.5kb upstream 0.5kb upstream 500 false scaffold_14: 112853-113352 Setaria italica
Seita.J019300 0.5kb downstream 0.5kb downstream 755 true scaffold_14: 113353-114107 Setaria italica
Seita.J019300 0.5kb downstream 0.5kb downstream 500 false scaffold_14: 113608-114107 Setaria italica
Seita.J019300 1.0kb upstream 1.0kb upstream 1255 true scaffold_14: 112353-113607 Setaria italica
Seita.J019300 1.0kb upstream 1.0kb upstream 1000 false scaffold_14: 112353-113352 Setaria italica
Seita.J019300 1.0kb downstream 1.0kb downstream 1255 true scaffold_14: 113353-114607 Setaria italica
Seita.J019300 1.0kb downstream 1.0kb downstream 1000 false scaffold_14: 113608-114607 Setaria italica
Seita.J019300 2.0kb upstream 2.0kb upstream 2255 true scaffold_14: 111353-113607 Setaria italica
Seita.J019300 2.0kb upstream 2.0kb upstream 2000 false scaffold_14: 111353-113352 Setaria italica
Seita.J019300 2.0kb downstream 2.0kb downstream 2255 true scaffold_14: 113353-115607 Setaria italica
Seita.J019300 2.0kb downstream 2.0kb downstream 2000 false scaffold_14: 113608-115607 Setaria italica
Seita.J019300 5.0kb upstream 5.0kb upstream 5255 true scaffold_14: 108353-113607 Setaria italica
Seita.J019300 5.0kb upstream 5.0kb upstream 5000 false scaffold_14: 108353-113352 Setaria italica
Seita.J019300 5.0kb downstream 5.0kb downstream 5255 true scaffold_14: 113353-118607 Setaria italica
Seita.J019300 5.0kb downstream 5.0kb downstream 5000 false scaffold_14: 113608-118607 Setaria italica
Seita.J019300 10.0kb upstream 10.0kb upstream 10255 true scaffold_14: 103353-113607 Setaria italica
Seita.J019300 10.0kb upstream 10.0kb upstream 10000 false scaffold_14: 103353-113352 Setaria italica
Seita.J019300 10.0kb downstream 10.0kb downstream 10255 true scaffold_14: 113353-123607 Setaria italica
Seita.J019300 10.0kb downstream 10.0kb downstream 10000 false scaffold_14: 113608-123607 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029216 5273 Angiosperm View MSA
122052645 5267 Panicoideae Singleton cluster - no MSA
124591072 5269 Grass View MSA
121348660 5274 Embryophyte View MSA
123428637 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.446        
cufflinks 1.735        
cufflinks 12.485     High  
cufflinks 13.49     High  
cufflinks 16.409     High  
cufflinks 1.496        
cufflinks 7.794        
cufflinks 9.718        
cufflinks 8.013        
cufflinks 291.915     High High
cufflinks 16.7     High  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 6.554        
cufflinks 5.998        
cufflinks 0.548       Low
cufflinks 7.262        
cufflinks 0.08     Low Low
cufflinks 4.712        
cufflinks 10.11        
cufflinks 0.0     Not Expressed Not Expressed

0 Strain