Gene : Seita.J020900 S. italica v2.2
Defline:  (1 of 3) PTHR11620//PTHR11620:SF12 - 60S RIBOSOMAL PROTEIN L23A Genomic Order:  83
Name:  ? Seita.J020900 Secondary Identifier:  ? PAC:32706085
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.J020900 0.5kb upstream 0.5kb upstream 743 true scaffold_14: 138431-139173 Setaria italica
Seita.J020900 0.5kb upstream 0.5kb upstream 500 false scaffold_14: 138431-138930 Setaria italica
Seita.J020900 0.5kb downstream 0.5kb downstream 743 true scaffold_14: 138931-139673 Setaria italica
Seita.J020900 0.5kb downstream 0.5kb downstream 500 false scaffold_14: 139174-139673 Setaria italica
Seita.J020900 1.0kb upstream 1.0kb upstream 1243 true scaffold_14: 137931-139173 Setaria italica
Seita.J020900 1.0kb upstream 1.0kb upstream 1000 false scaffold_14: 137931-138930 Setaria italica
Seita.J020900 1.0kb downstream 1.0kb downstream 1243 true scaffold_14: 138931-140173 Setaria italica
Seita.J020900 1.0kb downstream 1.0kb downstream 1000 false scaffold_14: 139174-140173 Setaria italica
Seita.J020900 2.0kb upstream 2.0kb upstream 2243 true scaffold_14: 136931-139173 Setaria italica
Seita.J020900 2.0kb upstream 2.0kb upstream 2000 false scaffold_14: 136931-138930 Setaria italica
Seita.J020900 2.0kb downstream 2.0kb downstream 2243 true scaffold_14: 138931-141173 Setaria italica
Seita.J020900 2.0kb downstream 2.0kb downstream 2000 false scaffold_14: 139174-141173 Setaria italica
Seita.J020900 5.0kb upstream 5.0kb upstream 5243 true scaffold_14: 133931-139173 Setaria italica
Seita.J020900 5.0kb upstream 5.0kb upstream 5000 false scaffold_14: 133931-138930 Setaria italica
Seita.J020900 5.0kb downstream 5.0kb downstream 5243 true scaffold_14: 138931-144173 Setaria italica
Seita.J020900 5.0kb downstream 5.0kb downstream 5000 false scaffold_14: 139174-144173 Setaria italica
Seita.J020900 10.0kb upstream 10.0kb upstream 10243 true scaffold_14: 128931-139173 Setaria italica
Seita.J020900 10.0kb upstream 10.0kb upstream 10000 false scaffold_14: 128931-138930 Setaria italica
Seita.J020900 10.0kb downstream 10.0kb downstream 8210 true scaffold_14: 138931-147140 Setaria italica
Seita.J020900 10.0kb downstream 10.0kb downstream 7967 false scaffold_14: 139174-147140 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028381 5273 Angiosperm View MSA
122191868 5267 Panicoideae View MSA
124590760 5269 Grass View MSA
121297880 5274 Embryophyte View MSA
123335894 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.099     Low Low
cufflinks 0.215        
cufflinks 0.459        
cufflinks 0.099       Low
cufflinks 0.076     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.997        
cufflinks 0.437        
cufflinks 0.151        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.449        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.967        
cufflinks 0.489        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 4.629       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.299       High
cufflinks 0.315        
cufflinks 0.0     Not Expressed Not Expressed

0 Strain