Gene : Seita.J017200 S. italica v2.2
Defline:  (1 of 2) PTHR22773:SF86 - NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT 2 A, CHLOROPLASTIC-RELATED Genomic Order:  46
Name:  ? Seita.J017200 Secondary Identifier:  ? PAC:32706125
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.J017200 0.5kb upstream 0.5kb upstream 3154 true scaffold_14: 71257-74410 Setaria italica
Seita.J017200 0.5kb upstream 0.5kb upstream 500 false scaffold_14: 71257-71756 Setaria italica
Seita.J017200 0.5kb downstream 0.5kb downstream 3154 true scaffold_14: 71757-74910 Setaria italica
Seita.J017200 0.5kb downstream 0.5kb downstream 500 false scaffold_14: 74411-74910 Setaria italica
Seita.J017200 1.0kb upstream 1.0kb upstream 3654 true scaffold_14: 70757-74410 Setaria italica
Seita.J017200 1.0kb upstream 1.0kb upstream 1000 false scaffold_14: 70757-71756 Setaria italica
Seita.J017200 1.0kb downstream 1.0kb downstream 3654 true scaffold_14: 71757-75410 Setaria italica
Seita.J017200 1.0kb downstream 1.0kb downstream 1000 false scaffold_14: 74411-75410 Setaria italica
Seita.J017200 2.0kb upstream 2.0kb upstream 4654 true scaffold_14: 69757-74410 Setaria italica
Seita.J017200 2.0kb upstream 2.0kb upstream 2000 false scaffold_14: 69757-71756 Setaria italica
Seita.J017200 2.0kb downstream 2.0kb downstream 4654 true scaffold_14: 71757-76410 Setaria italica
Seita.J017200 2.0kb downstream 2.0kb downstream 2000 false scaffold_14: 74411-76410 Setaria italica
Seita.J017200 5.0kb upstream 5.0kb upstream 7654 true scaffold_14: 66757-74410 Setaria italica
Seita.J017200 5.0kb upstream 5.0kb upstream 5000 false scaffold_14: 66757-71756 Setaria italica
Seita.J017200 5.0kb downstream 5.0kb downstream 7654 true scaffold_14: 71757-79410 Setaria italica
Seita.J017200 5.0kb downstream 5.0kb downstream 5000 false scaffold_14: 74411-79410 Setaria italica
Seita.J017200 10.0kb upstream 10.0kb upstream 12654 true scaffold_14: 61757-74410 Setaria italica
Seita.J017200 10.0kb upstream 10.0kb upstream 10000 false scaffold_14: 61757-71756 Setaria italica
Seita.J017200 10.0kb downstream 10.0kb downstream 12654 true scaffold_14: 71757-84410 Setaria italica
Seita.J017200 10.0kb downstream 10.0kb downstream 10000 false scaffold_14: 74411-84410 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190499 5267 Panicoideae View MSA
124586609 5269 Grass View MSA
122049707 5273 Angiosperm View MSA
121351606 5274 Embryophyte View MSA
123428700 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.621        
cufflinks 1.204        
cufflinks 10.679        
cufflinks 9.823        
cufflinks 10.646     High  
cufflinks 1.032       Low
cufflinks 7.658        
cufflinks 7.928        
cufflinks 7.406        
cufflinks 109.074     High High
cufflinks 4.887        
cufflinks 0.817       Low
cufflinks 3.76        
cufflinks 6.738        
cufflinks 0.584       Low
cufflinks 6.128        
cufflinks 0.79       Low
cufflinks 4.275        
cufflinks 10.194        
cufflinks 0.56       Low

0 Strain