Gene : Seita.J017900 S. italica v2.2
Defline:  (1 of 2) PF00124 - Photosynthetic reaction centre protein (Photo_RC) Genomic Order:  53
Name:  ? Seita.J017900 Secondary Identifier:  ? PAC:32706099
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PHOTOALL-PWY Setaria italica pathologic  
Sitalica PWY-101 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.J017900 0.5kb upstream 0.5kb upstream 1562 true scaffold_14: 80958-82519 Setaria italica
Seita.J017900 0.5kb upstream 0.5kb upstream 500 false scaffold_14: 82020-82519 Setaria italica
Seita.J017900 0.5kb downstream 0.5kb downstream 1562 true scaffold_14: 80458-82019 Setaria italica
Seita.J017900 0.5kb downstream 0.5kb downstream 500 false scaffold_14: 80458-80957 Setaria italica
Seita.J017900 1.0kb upstream 1.0kb upstream 2062 true scaffold_14: 80958-83019 Setaria italica
Seita.J017900 1.0kb upstream 1.0kb upstream 1000 false scaffold_14: 82020-83019 Setaria italica
Seita.J017900 1.0kb downstream 1.0kb downstream 2062 true scaffold_14: 79958-82019 Setaria italica
Seita.J017900 1.0kb downstream 1.0kb downstream 1000 false scaffold_14: 79958-80957 Setaria italica
Seita.J017900 2.0kb upstream 2.0kb upstream 3062 true scaffold_14: 80958-84019 Setaria italica
Seita.J017900 2.0kb upstream 2.0kb upstream 2000 false scaffold_14: 82020-84019 Setaria italica
Seita.J017900 2.0kb downstream 2.0kb downstream 3062 true scaffold_14: 78958-82019 Setaria italica
Seita.J017900 2.0kb downstream 2.0kb downstream 2000 false scaffold_14: 78958-80957 Setaria italica
Seita.J017900 5.0kb upstream 5.0kb upstream 6062 true scaffold_14: 80958-87019 Setaria italica
Seita.J017900 5.0kb upstream 5.0kb upstream 5000 false scaffold_14: 82020-87019 Setaria italica
Seita.J017900 5.0kb downstream 5.0kb downstream 6062 true scaffold_14: 75958-82019 Setaria italica
Seita.J017900 5.0kb downstream 5.0kb downstream 5000 false scaffold_14: 75958-80957 Setaria italica
Seita.J017900 10.0kb upstream 10.0kb upstream 11062 true scaffold_14: 80958-92019 Setaria italica
Seita.J017900 10.0kb upstream 10.0kb upstream 10000 false scaffold_14: 82020-92019 Setaria italica
Seita.J017900 10.0kb downstream 10.0kb downstream 11062 true scaffold_14: 70958-82019 Setaria italica
Seita.J017900 10.0kb downstream 10.0kb downstream 10000 false scaffold_14: 70958-80957 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122193421 5267 Panicoideae View MSA
124586576 5269 Grass View MSA
122047558 5273 Angiosperm View MSA
121350331 5274 Embryophyte View MSA
123381681 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.678       Low
cufflinks 6.43        
cufflinks 248.989     High High
cufflinks 118.803     High  
cufflinks 66.724     High  
cufflinks 3.898        
cufflinks 56.346     High  
cufflinks 35.399     High  
cufflinks 16.763     High  
cufflinks 371.418     High High
cufflinks 4.765        
cufflinks 0.45       Low
cufflinks 20.627     High  
cufflinks 130.297     High  
cufflinks 2.218        
cufflinks 164.208     High High
cufflinks 0.659       Low
cufflinks 42.073     High  
cufflinks 302.783     High High
cufflinks 0.727       Low

0 Strain