Gene : Seita.J018400 S. italica v2.2
Defline:  (1 of 2) PTHR34971:SF2 - PHOTOSYSTEM II REACTION CENTER PROTEIN Z Genomic Order:  58
Name:  ? Seita.J018400 Secondary Identifier:  ? PAC:32706058
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.J018400 0.5kb upstream 0.5kb upstream 1210 true scaffold_14: 91831-93040 Setaria italica
Seita.J018400 0.5kb upstream 0.5kb upstream 500 false scaffold_14: 91831-92330 Setaria italica
Seita.J018400 0.5kb downstream 0.5kb downstream 1210 true scaffold_14: 92331-93540 Setaria italica
Seita.J018400 0.5kb downstream 0.5kb downstream 500 false scaffold_14: 93041-93540 Setaria italica
Seita.J018400 1.0kb upstream 1.0kb upstream 1710 true scaffold_14: 91331-93040 Setaria italica
Seita.J018400 1.0kb upstream 1.0kb upstream 1000 false scaffold_14: 91331-92330 Setaria italica
Seita.J018400 1.0kb downstream 1.0kb downstream 1710 true scaffold_14: 92331-94040 Setaria italica
Seita.J018400 1.0kb downstream 1.0kb downstream 1000 false scaffold_14: 93041-94040 Setaria italica
Seita.J018400 2.0kb upstream 2.0kb upstream 2710 true scaffold_14: 90331-93040 Setaria italica
Seita.J018400 2.0kb upstream 2.0kb upstream 2000 false scaffold_14: 90331-92330 Setaria italica
Seita.J018400 2.0kb downstream 2.0kb downstream 2710 true scaffold_14: 92331-95040 Setaria italica
Seita.J018400 2.0kb downstream 2.0kb downstream 2000 false scaffold_14: 93041-95040 Setaria italica
Seita.J018400 5.0kb upstream 5.0kb upstream 5710 true scaffold_14: 87331-93040 Setaria italica
Seita.J018400 5.0kb upstream 5.0kb upstream 5000 false scaffold_14: 87331-92330 Setaria italica
Seita.J018400 5.0kb downstream 5.0kb downstream 5710 true scaffold_14: 92331-98040 Setaria italica
Seita.J018400 5.0kb downstream 5.0kb downstream 5000 false scaffold_14: 93041-98040 Setaria italica
Seita.J018400 10.0kb upstream 10.0kb upstream 10710 true scaffold_14: 82331-93040 Setaria italica
Seita.J018400 10.0kb upstream 10.0kb upstream 10000 false scaffold_14: 82331-92330 Setaria italica
Seita.J018400 10.0kb downstream 10.0kb downstream 10710 true scaffold_14: 92331-103040 Setaria italica
Seita.J018400 10.0kb downstream 10.0kb downstream 10000 false scaffold_14: 93041-103040 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028507 5273 Angiosperm View MSA
122199253 5267 Panicoideae View MSA
124585159 5269 Grass View MSA
121349923 5274 Embryophyte View MSA
123381503 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.689        
cufflinks 0.714        
cufflinks 6.36        
cufflinks 6.379        
cufflinks 6.211        
cufflinks 0.648        
cufflinks 3.031        
cufflinks 3.768        
cufflinks 4.057        
cufflinks 48.134     High High
cufflinks 3.19        
cufflinks 0.093     Low Low
cufflinks 1.659        
cufflinks 4.542        
cufflinks 0.209       Low
cufflinks 2.915        
cufflinks 0.121     Low Low
cufflinks 1.176        
cufflinks 6.995        
cufflinks 0.023     Low Low

0 Strain