Gene : Seita.J018200 S. italica v2.2
Defline:  (1 of 3) PTHR35325:SF1 - PHOTOSYSTEM II REACTION CENTER PROTEIN K Genomic Order:  56
Name:  ? Seita.J018200 Secondary Identifier:  ? PAC:32706054
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.J018200 0.5kb upstream 0.5kb upstream 686 true scaffold_14: 87228-87913 Setaria italica
Seita.J018200 0.5kb upstream 0.5kb upstream 500 false scaffold_14: 87228-87727 Setaria italica
Seita.J018200 0.5kb downstream 0.5kb downstream 686 true scaffold_14: 87728-88413 Setaria italica
Seita.J018200 0.5kb downstream 0.5kb downstream 500 false scaffold_14: 87914-88413 Setaria italica
Seita.J018200 1.0kb upstream 1.0kb upstream 1186 true scaffold_14: 86728-87913 Setaria italica
Seita.J018200 1.0kb upstream 1.0kb upstream 1000 false scaffold_14: 86728-87727 Setaria italica
Seita.J018200 1.0kb downstream 1.0kb downstream 1186 true scaffold_14: 87728-88913 Setaria italica
Seita.J018200 1.0kb downstream 1.0kb downstream 1000 false scaffold_14: 87914-88913 Setaria italica
Seita.J018200 2.0kb upstream 2.0kb upstream 2186 true scaffold_14: 85728-87913 Setaria italica
Seita.J018200 2.0kb upstream 2.0kb upstream 2000 false scaffold_14: 85728-87727 Setaria italica
Seita.J018200 2.0kb downstream 2.0kb downstream 2186 true scaffold_14: 87728-89913 Setaria italica
Seita.J018200 2.0kb downstream 2.0kb downstream 2000 false scaffold_14: 87914-89913 Setaria italica
Seita.J018200 5.0kb upstream 5.0kb upstream 5186 true scaffold_14: 82728-87913 Setaria italica
Seita.J018200 5.0kb upstream 5.0kb upstream 5000 false scaffold_14: 82728-87727 Setaria italica
Seita.J018200 5.0kb downstream 5.0kb downstream 5186 true scaffold_14: 87728-92913 Setaria italica
Seita.J018200 5.0kb downstream 5.0kb downstream 5000 false scaffold_14: 87914-92913 Setaria italica
Seita.J018200 10.0kb upstream 10.0kb upstream 10186 true scaffold_14: 77728-87913 Setaria italica
Seita.J018200 10.0kb upstream 10.0kb upstream 10000 false scaffold_14: 77728-87727 Setaria italica
Seita.J018200 10.0kb downstream 10.0kb downstream 10186 true scaffold_14: 87728-97913 Setaria italica
Seita.J018200 10.0kb downstream 10.0kb downstream 10000 false scaffold_14: 87914-97913 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027256 5273 Angiosperm View MSA
122182146 5267 Panicoideae View MSA
124588675 5269 Grass View MSA
121296936 5274 Embryophyte View MSA
123426665 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.822        
cufflinks 0.16       Low
cufflinks 1.22        
cufflinks 1.703        
cufflinks 2.395       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.861        
cufflinks 0.561        
cufflinks 2.484       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.897        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.255       Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.467        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.939        
cufflinks 0.308       Low
cufflinks 0.0     Not Expressed Not Expressed

0 Strain