Gene : Seita.1G323400 S. italica v2.2
Defline:  (1 of 2) 3.1.4.57 - Phosphoribosyl 1,2-cyclic phosphate 1,2-diphosphodiesterase / Cyclic phosphate dihydrolase Genomic Order:  3234
Name:  ? Seita.1G323400 Secondary Identifier:  ? PAC:32698029
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G323400 0.5kb upstream 0.5kb upstream 2665 true scaffold_1: 38311940-38314604 Setaria italica
Seita.1G323400 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 38311940-38312439 Setaria italica
Seita.1G323400 0.5kb downstream 0.5kb downstream 2665 true scaffold_1: 38312440-38315104 Setaria italica
Seita.1G323400 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 38314605-38315104 Setaria italica
Seita.1G323400 1.0kb upstream 1.0kb upstream 3165 true scaffold_1: 38311440-38314604 Setaria italica
Seita.1G323400 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 38311440-38312439 Setaria italica
Seita.1G323400 1.0kb downstream 1.0kb downstream 3165 true scaffold_1: 38312440-38315604 Setaria italica
Seita.1G323400 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 38314605-38315604 Setaria italica
Seita.1G323400 2.0kb upstream 2.0kb upstream 4165 true scaffold_1: 38310440-38314604 Setaria italica
Seita.1G323400 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 38310440-38312439 Setaria italica
Seita.1G323400 2.0kb downstream 2.0kb downstream 4165 true scaffold_1: 38312440-38316604 Setaria italica
Seita.1G323400 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 38314605-38316604 Setaria italica
Seita.1G323400 5.0kb upstream 5.0kb upstream 7165 true scaffold_1: 38307440-38314604 Setaria italica
Seita.1G323400 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 38307440-38312439 Setaria italica
Seita.1G323400 5.0kb downstream 5.0kb downstream 7165 true scaffold_1: 38312440-38319604 Setaria italica
Seita.1G323400 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 38314605-38319604 Setaria italica
Seita.1G323400 10.0kb upstream 10.0kb upstream 12165 true scaffold_1: 38302440-38314604 Setaria italica
Seita.1G323400 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 38302440-38312439 Setaria italica
Seita.1G323400 10.0kb downstream 10.0kb downstream 12165 true scaffold_1: 38312440-38324604 Setaria italica
Seita.1G323400 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 38314605-38324604 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122005822 5273 Angiosperm View MSA
122175375 5267 Panicoideae View MSA
124575410 5269 Grass View MSA
121350433 5274 Embryophyte View MSA
123381728 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.997        
cufflinks 5.224       High
cufflinks 0.075     Low Low
cufflinks 0.116       Low
cufflinks 0.328        
cufflinks 4.716       High
cufflinks 2.363        
cufflinks 1.956        
cufflinks 1.494        
cufflinks 2.741        
cufflinks 2.214        
cufflinks 0.749        
cufflinks 1.311        
cufflinks 0.148       Low
cufflinks 1.337        
cufflinks 1.176        
cufflinks 0.634        
cufflinks 0.654        
cufflinks 0.229       Low
cufflinks 1.154        

0 Strain