Gene : Seita.1G322000 S. italica v2.2
Defline:  (1 of 62) PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  3220
Name:  ? Seita.1G322000 Secondary Identifier:  ? PAC:32698352
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G322000 0.5kb upstream 0.5kb upstream 3115 true scaffold_1: 38223859-38226973 Setaria italica
Seita.1G322000 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 38223859-38224358 Setaria italica
Seita.1G322000 0.5kb downstream 0.5kb downstream 3115 true scaffold_1: 38224359-38227473 Setaria italica
Seita.1G322000 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 38226974-38227473 Setaria italica
Seita.1G322000 1.0kb upstream 1.0kb upstream 3615 true scaffold_1: 38223359-38226973 Setaria italica
Seita.1G322000 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 38223359-38224358 Setaria italica
Seita.1G322000 1.0kb downstream 1.0kb downstream 3615 true scaffold_1: 38224359-38227973 Setaria italica
Seita.1G322000 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 38226974-38227973 Setaria italica
Seita.1G322000 2.0kb upstream 2.0kb upstream 4615 true scaffold_1: 38222359-38226973 Setaria italica
Seita.1G322000 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 38222359-38224358 Setaria italica
Seita.1G322000 2.0kb downstream 2.0kb downstream 4615 true scaffold_1: 38224359-38228973 Setaria italica
Seita.1G322000 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 38226974-38228973 Setaria italica
Seita.1G322000 5.0kb upstream 5.0kb upstream 7615 true scaffold_1: 38219359-38226973 Setaria italica
Seita.1G322000 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 38219359-38224358 Setaria italica
Seita.1G322000 5.0kb downstream 5.0kb downstream 7615 true scaffold_1: 38224359-38231973 Setaria italica
Seita.1G322000 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 38226974-38231973 Setaria italica
Seita.1G322000 10.0kb upstream 10.0kb upstream 12615 true scaffold_1: 38214359-38226973 Setaria italica
Seita.1G322000 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 38214359-38224358 Setaria italica
Seita.1G322000 10.0kb downstream 10.0kb downstream 12615 true scaffold_1: 38224359-38236973 Setaria italica
Seita.1G322000 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 38226974-38236973 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181088 5267 Panicoideae View MSA
124572829 5269 Grass View MSA
122046290 5273 Angiosperm View MSA
121345474 5274 Embryophyte View MSA
123380225 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.529        
cufflinks 7.874        
cufflinks 4.994        
cufflinks 3.049        
cufflinks 8.84        
cufflinks 7.624        
cufflinks 14.066     High High
cufflinks 16.464     High High
cufflinks 28.612     High High
cufflinks 3.404        
cufflinks 5.735        
cufflinks 1.02       Low
cufflinks 1.317       Low
cufflinks 7.546        
cufflinks 1.244       Low
cufflinks 9.752        
cufflinks 1.334       Low
cufflinks 5.865        
cufflinks 3.424        
cufflinks 1.195       Low

0 Strain